Strain Fitness in Sinorhizobium meliloti 1021 around SMa0308

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0307 and SMa0308 are separated by 60 nucleotidesSMa0308 and SMa0310 are separated by 250 nucleotides SMa0307: SMa0307 - LysR family transcriptional regulator, at 172,016 to 173,002 SMa0307 SMa0308: SMa0308 - hypothetical protein, at 173,063 to 174,022 SMa0308 SMa0310: SMa0310 - hypothetical protein, at 174,273 to 175,004 SMa0310 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 172.184 kb on + strand, within SMa0307at 172.378 kb on + strand, within SMa0307at 172.379 kb on - strand, within SMa0307at 172.379 kb on - strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.380 kb on + strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.381 kb on - strand, within SMa0307at 172.436 kb on + strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.437 kb on - strand, within SMa0307at 172.439 kb on + strand, within SMa0307at 172.440 kb on - strand, within SMa0307at 172.488 kb on + strand, within SMa0307at 172.489 kb on - strand, within SMa0307at 172.489 kb on - strand, within SMa0307at 172.686 kb on - strand, within SMa0307at 172.686 kb on - strand, within SMa0307at 172.697 kb on + strand, within SMa0307at 172.698 kb on - strand, within SMa0307at 172.829 kb on + strand, within SMa0307at 172.829 kb on + strand, within SMa0307at 172.830 kb on - strand, within SMa0307at 172.831 kb on + strand, within SMa0307at 173.006 kb on + strandat 173.006 kb on + strandat 173.006 kb on + strandat 173.007 kb on - strandat 173.007 kb on - strandat 173.007 kb on - strandat 173.045 kb on + strandat 173.046 kb on - strandat 173.235 kb on + strand, within SMa0308at 173.235 kb on + strand, within SMa0308at 173.236 kb on - strand, within SMa0308at 173.236 kb on - strand, within SMa0308at 173.258 kb on + strand, within SMa0308at 173.258 kb on + strand, within SMa0308at 173.400 kb on + strand, within SMa0308at 173.401 kb on - strand, within SMa0308at 173.485 kb on + strand, within SMa0308at 173.485 kb on + strand, within SMa0308at 173.486 kb on - strand, within SMa0308at 173.486 kb on - strand, within SMa0308at 173.551 kb on - strand, within SMa0308at 173.660 kb on + strand, within SMa0308at 173.660 kb on + strand, within SMa0308at 173.661 kb on - strand, within SMa0308at 173.732 kb on + strand, within SMa0308at 173.732 kb on + strand, within SMa0308at 173.743 kb on + strand, within SMa0308at 173.743 kb on + strand, within SMa0308at 173.743 kb on + strand, within SMa0308at 173.744 kb on - strand, within SMa0308at 173.744 kb on - strand, within SMa0308at 173.744 kb on - strand, within SMa0308at 173.794 kb on - strand, within SMa0308at 173.821 kb on + strand, within SMa0308at 173.927 kb on + strandat 173.948 kb on - strandat 173.994 kb on - strandat 174.014 kb on + strandat 174.015 kb on - strandat 174.254 kb on + strandat 174.255 kb on - strandat 174.335 kb on + strandat 174.385 kb on + strand, within SMa0310at 174.385 kb on + strand, within SMa0310at 174.385 kb on + strand, within SMa0310at 174.424 kb on + strand, within SMa0310at 174.424 kb on + strand, within SMa0310at 174.424 kb on + strand, within SMa0310at 174.424 kb on + strand, within SMa0310at 174.424 kb on + strand, within SMa0310at 174.425 kb on - strand, within SMa0310at 174.425 kb on - strand, within SMa0310at 174.425 kb on - strand, within SMa0310at 174.425 kb on - strand, within SMa0310at 174.425 kb on - strand, within SMa0310at 174.455 kb on + strand, within SMa0310at 174.456 kb on - strand, within SMa0310at 174.456 kb on - strand, within SMa0310at 174.456 kb on - strand, within SMa0310at 174.459 kb on - strand, within SMa0310at 174.540 kb on + strand, within SMa0310at 174.540 kb on + strand, within SMa0310at 174.541 kb on - strand, within SMa0310at 174.716 kb on + strand, within SMa0310at 174.878 kb on + strand, within SMa0310at 174.879 kb on - strand, within SMa0310

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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172,184 + SMa0307 0.17 -0.9
172,378 + SMa0307 0.37 +1.0
172,379 - SMa0307 0.37 -0.6
172,379 - SMa0307 0.37 +1.3
172,380 + SMa0307 0.37 +0.4
172,380 + SMa0307 0.37 +0.4
172,380 + SMa0307 0.37 +0.3
172,380 + SMa0307 0.37 +0.2
172,380 + SMa0307 0.37 -1.1
172,380 + SMa0307 0.37 -0.6
172,380 + SMa0307 0.37 +1.1
172,381 - SMa0307 0.37 +0.6
172,381 - SMa0307 0.37 +0.1
172,381 - SMa0307 0.37 +0.6
172,436 + SMa0307 0.43 -0.2
172,437 - SMa0307 0.43 +0.3
172,437 - SMa0307 0.43 +0.3
172,437 - SMa0307 0.43 -0.1
172,437 - SMa0307 0.43 -0.2
172,439 + SMa0307 0.43 +0.3
172,440 - SMa0307 0.43 +0.3
172,488 + SMa0307 0.48 +0.6
172,489 - SMa0307 0.48 +0.8
172,489 - SMa0307 0.48 +0.0
172,686 - SMa0307 0.68 +0.6
172,686 - SMa0307 0.68 -0.3
172,697 + SMa0307 0.69 -0.9
172,698 - SMa0307 0.69 -0.8
172,829 + SMa0307 0.82 -0.9
172,829 + SMa0307 0.82 -0.2
172,830 - SMa0307 0.82 -0.2
172,831 + SMa0307 0.83 -0.8
173,006 + -0.9
173,006 + -0.2
173,006 + +0.5
173,007 - -0.3
173,007 - +1.3
173,007 - -0.5
173,045 + +0.2
173,046 - +0.4
173,235 + SMa0308 0.18 -0.8
173,235 + SMa0308 0.18 +0.3
173,236 - SMa0308 0.18 +0.0
173,236 - SMa0308 0.18 +0.3
173,258 + SMa0308 0.20 +0.2
173,258 + SMa0308 0.20 +0.1
173,400 + SMa0308 0.35 -0.0
173,401 - SMa0308 0.35 -1.6
173,485 + SMa0308 0.44 +0.5
173,485 + SMa0308 0.44 +0.3
173,486 - SMa0308 0.44 +4.4
173,486 - SMa0308 0.44 +0.7
173,551 - SMa0308 0.51 +0.2
173,660 + SMa0308 0.62 -0.2
173,660 + SMa0308 0.62 -0.2
173,661 - SMa0308 0.62 -1.7
173,732 + SMa0308 0.70 -0.3
173,732 + SMa0308 0.70 +0.2
173,743 + SMa0308 0.71 +0.1
173,743 + SMa0308 0.71 -0.1
173,743 + SMa0308 0.71 +0.6
173,744 - SMa0308 0.71 -0.6
173,744 - SMa0308 0.71 +0.3
173,744 - SMa0308 0.71 -0.6
173,794 - SMa0308 0.76 +1.7
173,821 + SMa0308 0.79 -0.4
173,927 + -1.0
173,948 - -0.5
173,994 - -0.2
174,014 + -0.9
174,015 - -0.4
174,254 + +1.2
174,255 - -1.0
174,335 + +0.2
174,385 + SMa0310 0.15 +0.4
174,385 + SMa0310 0.15 +0.8
174,385 + SMa0310 0.15 +0.4
174,424 + SMa0310 0.21 -0.2
174,424 + SMa0310 0.21 +0.4
174,424 + SMa0310 0.21 -0.5
174,424 + SMa0310 0.21 +1.8
174,424 + SMa0310 0.21 -0.0
174,425 - SMa0310 0.21 -0.5
174,425 - SMa0310 0.21 -0.9
174,425 - SMa0310 0.21 -0.3
174,425 - SMa0310 0.21 +1.2
174,425 - SMa0310 0.21 +0.9
174,455 + SMa0310 0.25 -1.8
174,456 - SMa0310 0.25 +0.1
174,456 - SMa0310 0.25 -2.4
174,456 - SMa0310 0.25 -0.1
174,459 - SMa0310 0.25 -0.9
174,540 + SMa0310 0.36 +0.8
174,540 + SMa0310 0.36 +0.6
174,541 - SMa0310 0.37 -0.6
174,716 + SMa0310 0.61 +0.2
174,878 + SMa0310 0.83 +0.6
174,879 - SMa0310 0.83 +0.1

Or see this region's nucleotide sequence