Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21566 and SM_b22023 are separated by 46 nucleotides SM_b22023 and SM_b21568 are separated by 281 nucleotides SM_b21568 and SM_b21569 are separated by 232 nucleotides
SM_b21566: SM_b21566 - molecular chaperone GroEL, at 1,104,605 to 1,106,233
_b21566
SM_b22023: SM_b22023 - molecular chaperone GroES, at 1,106,280 to 1,106,594
_b22023
SM_b21568: SM_b21568 - hypothetical protein, at 1,106,876 to 1,107,148
_b21568
SM_b21569: SM_b21569 - transcriptional regulator, at 1,107,381 to 1,107,980
_b21569
Position (kb) 1106
1107 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1105.349 kb on - strand, within SM_b21566 at 1105.576 kb on + strand, within SM_b21566 at 1105.576 kb on + strand, within SM_b21566 at 1105.578 kb on + strand, within SM_b21566 at 1105.578 kb on + strand, within SM_b21566 at 1105.579 kb on - strand, within SM_b21566 at 1105.579 kb on - strand, within SM_b21566 at 1105.626 kb on + strand, within SM_b21566 at 1105.627 kb on - strand, within SM_b21566 at 1105.657 kb on + strand, within SM_b21566 at 1105.658 kb on - strand, within SM_b21566 at 1105.752 kb on + strand, within SM_b21566 at 1105.753 kb on - strand, within SM_b21566 at 1105.753 kb on - strand, within SM_b21566 at 1106.148 kb on - strand at 1106.148 kb on - strand at 1106.153 kb on + strand at 1106.249 kb on + strand at 1106.249 kb on + strand at 1106.250 kb on - strand at 1106.250 kb on - strand at 1106.267 kb on + strand at 1106.267 kb on + strand at 1106.268 kb on - strand at 1106.278 kb on + strand at 1106.289 kb on + strand at 1106.466 kb on + strand, within SM_b22023 at 1106.466 kb on + strand, within SM_b22023 at 1106.567 kb on + strand at 1106.568 kb on - strand at 1106.806 kb on + strand at 1106.806 kb on + strand at 1106.858 kb on - strand at 1106.858 kb on - strand at 1106.858 kb on - strand at 1106.861 kb on + strand at 1106.861 kb on + strand at 1106.861 kb on + strand at 1106.862 kb on - strand at 1106.862 kb on - strand at 1106.935 kb on + strand, within SM_b21568 at 1106.936 kb on - strand, within SM_b21568 at 1106.936 kb on - strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand, within SM_b21568 at 1106.978 kb on + strand at 1106.978 kb on + strand, within SM_b21568 at 1106.979 kb on - strand, within SM_b21568 at 1106.993 kb on + strand, within SM_b21568 at 1106.994 kb on - strand, within SM_b21568 at 1106.994 kb on - strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.049 kb on + strand, within SM_b21568 at 1107.050 kb on - strand, within SM_b21568 at 1107.279 kb on - strand at 1107.400 kb on - strand at 1107.467 kb on - strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569 at 1107.541 kb on + strand, within SM_b21569
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,105,349 - SM_b21566 0.46 -0.6 1,105,576 + SM_b21566 0.60 +3.8 1,105,576 + SM_b21566 0.60 +0.3 1,105,578 + SM_b21566 0.60 +0.3 1,105,578 + SM_b21566 0.60 -0.4 1,105,579 - SM_b21566 0.60 +1.5 1,105,579 - SM_b21566 0.60 -0.0 1,105,626 + SM_b21566 0.63 +0.9 1,105,627 - SM_b21566 0.63 -0.2 1,105,657 + SM_b21566 0.65 -0.5 1,105,658 - SM_b21566 0.65 +0.1 1,105,752 + SM_b21566 0.70 +1.3 1,105,753 - SM_b21566 0.70 +0.1 1,105,753 - SM_b21566 0.70 +0.8 1,106,148 - -1.6 1,106,148 - +1.3 1,106,153 + -0.3 1,106,249 + +0.3 1,106,249 + -0.0 1,106,250 - -0.8 1,106,250 - -0.7 1,106,267 + +0.3 1,106,267 + -0.1 1,106,268 - +0.1 1,106,278 + -1.6 1,106,289 + +0.4 1,106,466 + SM_b22023 0.59 -1.5 1,106,466 + SM_b22023 0.59 -0.6 1,106,567 + -0.6 1,106,568 - +0.3 1,106,806 + +0.5 1,106,806 + +0.2 1,106,858 - -0.0 1,106,858 - +1.1 1,106,858 - -0.9 1,106,861 + -0.1 1,106,861 + -0.8 1,106,861 + +0.2 1,106,862 - +0.3 1,106,862 - +0.3 1,106,935 + SM_b21568 0.22 +0.8 1,106,936 - SM_b21568 0.22 +0.1 1,106,936 - SM_b21568 0.22 +0.6 1,106,978 + SM_b21568 0.37 -0.1 1,106,978 + SM_b21568 0.37 +0.2 1,106,978 + SM_b21568 0.37 -0.5 1,106,978 + +0.7 1,106,978 + SM_b21568 0.37 -0.4 1,106,979 - SM_b21568 0.38 -0.2 1,106,993 + SM_b21568 0.43 +0.4 1,106,994 - SM_b21568 0.43 -0.2 1,106,994 - SM_b21568 0.43 +0.1 1,107,049 + SM_b21568 0.63 -0.3 1,107,049 + SM_b21568 0.63 +1.0 1,107,049 + SM_b21568 0.63 +0.0 1,107,050 - SM_b21568 0.64 +0.4 1,107,279 - +0.2 1,107,400 - +0.1 1,107,467 - SM_b21569 0.14 -1.0 1,107,541 + SM_b21569 0.27 +0.4 1,107,541 + SM_b21569 0.27 -1.9 1,107,541 + SM_b21569 0.27 +0.5
Or see this region's nucleotide sequence