Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20159 and SM_b22005 are separated by 678 nucleotides SM_b22005 and SM_b20161 overlap by 4 nucleotides SM_b20161 and SM_b20162 are separated by 193 nucleotides
SM_b20159: SM_b20159 - inositol monophosphatase, at 177,605 to 178,489
_b20159
SM_b22005: SM_b22005 - hypothetical protein, at 179,168 to 179,536
_b22005
SM_b20161: SM_b20161 - hypothetical protein, at 179,533 to 179,883
_b20161
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
Position (kb) 179
180 Strain fitness (log2 ratio) -1
0
1
2 at 178.338 kb on - strand, within SM_b20159 at 178.397 kb on + strand, within SM_b20159 at 178.612 kb on - strand at 178.740 kb on + strand at 178.810 kb on - strand at 178.866 kb on + strand at 178.869 kb on + strand at 178.869 kb on + strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.870 kb on - strand at 178.897 kb on + strand at 178.897 kb on + strand at 178.917 kb on + strand at 178.918 kb on - strand at 179.000 kb on - strand at 179.000 kb on - strand at 179.088 kb on + strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.089 kb on - strand at 179.497 kb on - strand, within SM_b22005 at 179.599 kb on + strand, within SM_b20161 at 179.601 kb on + strand, within SM_b20161 at 179.601 kb on + strand, within SM_b20161 at 179.602 kb on - strand, within SM_b20161 at 179.605 kb on - strand, within SM_b20161 at 179.670 kb on + strand, within SM_b20161 at 179.671 kb on - strand, within SM_b20161 at 179.671 kb on - strand, within SM_b20161 at 179.765 kb on + strand, within SM_b20161 at 179.766 kb on - strand, within SM_b20161 at 179.910 kb on + strand at 179.910 kb on + strand at 179.911 kb on - strand at 180.059 kb on + strand at 180.060 kb on - strand at 180.149 kb on + strand, within SM_b20162 at 180.150 kb on - strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.304 kb on - strand, within SM_b20162 at 180.442 kb on + strand, within SM_b20162 at 180.443 kb on - strand, within SM_b20162 at 180.466 kb on + strand, within SM_b20162 at 180.485 kb on + strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.501 kb on - strand, within SM_b20162
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 178,338 - SM_b20159 0.83 -0.0 178,397 + SM_b20159 0.89 -0.7 178,612 - -0.3 178,740 + +0.2 178,810 - -0.1 178,866 + +0.5 178,869 + +0.3 178,869 + +0.2 178,870 - +0.5 178,870 - -0.1 178,870 - +0.4 178,897 + +0.4 178,897 + -0.2 178,917 + -0.4 178,918 - -0.2 179,000 - +0.4 179,000 - +0.3 179,088 + +1.0 179,089 - +0.5 179,089 - -1.5 179,089 - +0.6 179,089 - +1.5 179,089 - +0.6 179,089 - -0.1 179,497 - SM_b22005 0.89 -1.4 179,599 + SM_b20161 0.19 -0.6 179,601 + SM_b20161 0.19 -0.5 179,601 + SM_b20161 0.19 -0.6 179,602 - SM_b20161 0.20 +2.1 179,605 - SM_b20161 0.21 -0.4 179,670 + SM_b20161 0.39 -0.2 179,671 - SM_b20161 0.39 -0.2 179,671 - SM_b20161 0.39 +0.9 179,765 + SM_b20161 0.66 +0.1 179,766 - SM_b20161 0.66 +1.4 179,910 + +0.0 179,910 + +0.3 179,911 - +0.5 180,059 + +0.5 180,060 - +0.5 180,149 + SM_b20162 0.10 +1.0 180,150 - SM_b20162 0.11 +0.9 180,190 + SM_b20162 0.16 +0.2 180,190 + SM_b20162 0.16 -0.1 180,304 - SM_b20162 0.33 +0.1 180,442 + SM_b20162 0.53 +0.4 180,443 - SM_b20162 0.53 -0.3 180,466 + SM_b20162 0.56 +0.6 180,485 + SM_b20162 0.59 -0.3 180,486 - SM_b20162 0.59 -0.3 180,486 - SM_b20162 0.59 +0.3 180,486 - SM_b20162 0.59 +0.3 180,486 - SM_b20162 0.59 -0.8 180,486 - SM_b20162 0.59 +2.2 180,501 - SM_b20162 0.61 +1.1
Or see this region's nucleotide sequence