Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20222 and SM_b22001 are separated by 699 nucleotides SM_b22001 and SM_b20225 are separated by 281 nucleotides
SM_b20222: SM_b20222 - hypothetical protein, at 229,750 to 230,172
_b20222
SM_b22001: SM_b22001 - hypothetical protein, at 230,872 to 231,375
_b22001
SM_b20225: SM_b20225 - osmotically inducible sensory protein, at 231,657 to 232,343
_b20225
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.937 kb on + strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 229.938 kb on - strand, within SM_b20222 at 230.152 kb on - strand at 230.152 kb on - strand at 230.205 kb on + strand at 230.223 kb on + strand at 230.223 kb on + strand at 230.224 kb on - strand at 230.224 kb on - strand at 230.541 kb on + strand at 230.541 kb on + strand at 230.542 kb on - strand at 230.686 kb on + strand at 230.687 kb on - strand at 230.725 kb on + strand at 230.779 kb on + strand at 230.865 kb on - strand at 230.903 kb on + strand at 230.903 kb on + strand at 231.218 kb on - strand, within SM_b22001 at 231.245 kb on + strand, within SM_b22001 at 231.323 kb on - strand, within SM_b22001 at 231.443 kb on + strand at 231.443 kb on + strand at 231.443 kb on + strand at 231.444 kb on - strand at 231.444 kb on - strand at 231.456 kb on + strand at 231.457 kb on - strand at 231.612 kb on + strand at 231.850 kb on + strand, within SM_b20225 at 231.926 kb on - strand, within SM_b20225 at 232.075 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.093 kb on + strand, within SM_b20225 at 232.094 kb on - strand, within SM_b20225 at 232.123 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.162 kb on + strand, within SM_b20225 at 232.163 kb on - strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.264 kb on + strand, within SM_b20225 at 232.265 kb on - strand, within SM_b20225
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 229,937 + SM_b20222 0.44 -0.6 229,937 + SM_b20222 0.44 +2.4 229,937 + SM_b20222 0.44 -0.7 229,938 - SM_b20222 0.44 -0.5 229,938 - SM_b20222 0.44 -0.0 229,938 - SM_b20222 0.44 -0.7 230,152 - -2.0 230,152 - -0.6 230,205 + +0.3 230,223 + -0.7 230,223 + -0.0 230,224 - -0.2 230,224 - -1.7 230,541 + +0.9 230,541 + -0.1 230,542 - -0.1 230,686 + -0.3 230,687 - +1.6 230,725 + -0.7 230,779 + +0.7 230,865 - +0.3 230,903 + -0.0 230,903 + -0.5 231,218 - SM_b22001 0.69 -1.4 231,245 + SM_b22001 0.74 -1.0 231,323 - SM_b22001 0.89 +0.2 231,443 + -0.1 231,443 + -0.9 231,443 + -0.5 231,444 - -1.5 231,444 - -0.2 231,456 + +0.5 231,457 - -0.0 231,612 + -0.0 231,850 + SM_b20225 0.28 -0.1 231,926 - SM_b20225 0.39 -0.0 232,075 + SM_b20225 0.61 -0.1 232,093 + SM_b20225 0.63 +0.3 232,093 + SM_b20225 0.63 -0.6 232,094 - SM_b20225 0.64 -1.5 232,123 + SM_b20225 0.68 -0.8 232,162 + SM_b20225 0.74 -0.5 232,162 + SM_b20225 0.74 -0.3 232,162 + SM_b20225 0.74 -0.6 232,163 - SM_b20225 0.74 -0.6 232,264 + SM_b20225 0.88 -0.4 232,264 + SM_b20225 0.88 -0.1 232,265 - SM_b20225 0.89 -0.3
Or see this region's nucleotide sequence