Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21640 and SM_b21641 are separated by 204 nucleotides SM_b21641 and SM_b21642 are separated by 244 nucleotides
SM_b21640: SM_b21640 - phenylacetate-CoA oxygenase subunit PaaA, at 1,667,831 to 1,668,829
_b21640
SM_b21641: SM_b21641 - ArsR family transcriptional regulator, at 1,669,034 to 1,669,954
_b21641
SM_b21642: SM_b21642 - hypothetical protein, at 1,670,199 to 1,670,714
_b21642
Position (kb)
1669
1670 Strain fitness (log2 ratio)
-1
0
1
2 at 1668.445 kb on - strand, within SM_b21640 at 1668.463 kb on - strand, within SM_b21640 at 1668.463 kb on - strand, within SM_b21640 at 1668.534 kb on + strand, within SM_b21640 at 1668.534 kb on + strand, within SM_b21640 at 1668.535 kb on - strand, within SM_b21640 at 1668.541 kb on - strand, within SM_b21640 at 1668.541 kb on - strand, within SM_b21640 at 1668.541 kb on - strand, within SM_b21640 at 1668.825 kb on + strand at 1668.825 kb on + strand at 1668.826 kb on - strand at 1668.826 kb on - strand at 1669.035 kb on + strand at 1669.129 kb on + strand, within SM_b21641 at 1669.130 kb on - strand, within SM_b21641 at 1669.185 kb on + strand, within SM_b21641 at 1669.185 kb on + strand, within SM_b21641 at 1669.289 kb on + strand, within SM_b21641 at 1669.389 kb on + strand, within SM_b21641 at 1669.689 kb on + strand, within SM_b21641 at 1669.778 kb on - strand, within SM_b21641 at 1669.864 kb on + strand at 1669.864 kb on + strand at 1669.865 kb on - strand at 1670.052 kb on - strand at 1670.065 kb on + strand at 1670.065 kb on + strand at 1670.066 kb on - strand at 1670.066 kb on - strand at 1670.066 kb on - strand at 1670.104 kb on + strand at 1670.219 kb on + strand at 1670.439 kb on + strand, within SM_b21642 at 1670.440 kb on - strand, within SM_b21642 at 1670.471 kb on + strand, within SM_b21642 at 1670.477 kb on + strand, within SM_b21642 at 1670.478 kb on - strand, within SM_b21642 at 1670.715 kb on + strand at 1670.715 kb on + strand at 1670.726 kb on + strand at 1670.726 kb on + strand at 1670.727 kb on - strand at 1670.844 kb on - strand at 1670.844 kb on - strand at 1670.845 kb on + strand at 1670.877 kb on + strand at 1670.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,668,445 - SM_b21640 0.61 -0.2 1,668,463 - SM_b21640 0.63 -0.0 1,668,463 - SM_b21640 0.63 -0.1 1,668,534 + SM_b21640 0.70 +0.0 1,668,534 + SM_b21640 0.70 -0.1 1,668,535 - SM_b21640 0.70 -0.5 1,668,541 - SM_b21640 0.71 +0.6 1,668,541 - SM_b21640 0.71 -0.2 1,668,541 - SM_b21640 0.71 +1.1 1,668,825 + -0.5 1,668,825 + +0.1 1,668,826 - +0.2 1,668,826 - -0.0 1,669,035 + -0.3 1,669,129 + SM_b21641 0.10 -1.5 1,669,130 - SM_b21641 0.10 -0.5 1,669,185 + SM_b21641 0.16 -1.1 1,669,185 + SM_b21641 0.16 -1.1 1,669,289 + SM_b21641 0.28 +0.2 1,669,389 + SM_b21641 0.39 -0.7 1,669,689 + SM_b21641 0.71 -0.7 1,669,778 - SM_b21641 0.81 +1.5 1,669,864 + -0.7 1,669,864 + -1.5 1,669,865 - -0.8 1,670,052 - -0.7 1,670,065 + -0.6 1,670,065 + -0.8 1,670,066 - +0.5 1,670,066 - +0.8 1,670,066 - +0.5 1,670,104 + -0.2 1,670,219 + -0.7 1,670,439 + SM_b21642 0.47 +0.3 1,670,440 - SM_b21642 0.47 -0.2 1,670,471 + SM_b21642 0.53 -0.4 1,670,477 + SM_b21642 0.54 +0.3 1,670,478 - SM_b21642 0.54 -1.3 1,670,715 + -0.2 1,670,715 + +0.2 1,670,726 + +2.1 1,670,726 + -0.5 1,670,727 - -0.4 1,670,844 - +0.8 1,670,844 - -1.0 1,670,845 + -0.0 1,670,877 + -0.4 1,670,886 - -1.4
Or see this region's nucleotide sequence