Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21537 and SM_b21538 are separated by 27 nucleotides SM_b21538 and SM_b21539 overlap by 4 nucleotides
SM_b21537: SM_b21537 - 2-aminoethylphosphonate--pyruvate transaminase, at 1,065,825 to 1,066,976
_b21537
SM_b21538: SM_b21538 - phosphonoacetate hydrolase, at 1,067,004 to 1,068,278
_b21538
SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732
_b21539
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1066.092 kb on + strand, within SM_b21537 at 1066.092 kb on + strand, within SM_b21537 at 1066.092 kb on + strand, within SM_b21537 at 1066.123 kb on - strand, within SM_b21537 at 1066.161 kb on + strand, within SM_b21537 at 1066.161 kb on + strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.162 kb on - strand, within SM_b21537 at 1066.163 kb on + strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.164 kb on - strand, within SM_b21537 at 1066.293 kb on + strand, within SM_b21537 at 1066.294 kb on - strand, within SM_b21537 at 1066.294 kb on - strand, within SM_b21537 at 1066.512 kb on + strand, within SM_b21537 at 1066.512 kb on + strand, within SM_b21537 at 1066.512 kb on + strand, within SM_b21537 at 1066.513 kb on - strand, within SM_b21537 at 1066.542 kb on - strand, within SM_b21537 at 1066.542 kb on - strand, within SM_b21537 at 1066.542 kb on - strand, within SM_b21537 at 1066.767 kb on + strand, within SM_b21537 at 1066.768 kb on - strand, within SM_b21537 at 1066.768 kb on - strand, within SM_b21537 at 1066.768 kb on - strand, within SM_b21537 at 1066.800 kb on + strand, within SM_b21537 at 1066.800 kb on + strand, within SM_b21537 at 1067.107 kb on - strand at 1067.272 kb on - strand, within SM_b21538 at 1067.272 kb on - strand, within SM_b21538 at 1067.355 kb on + strand, within SM_b21538 at 1067.356 kb on - strand, within SM_b21538 at 1067.545 kb on - strand, within SM_b21538 at 1067.619 kb on + strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.652 kb on + strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.802 kb on + strand, within SM_b21538 at 1067.802 kb on + strand, within SM_b21538 at 1067.803 kb on - strand, within SM_b21538 at 1067.803 kb on - strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.916 kb on + strand, within SM_b21538 at 1068.325 kb on - strand at 1068.358 kb on - strand at 1068.452 kb on + strand, within SM_b21539 at 1068.453 kb on - strand, within SM_b21539 at 1068.584 kb on + strand at 1068.584 kb on + strand, within SM_b21539 at 1068.613 kb on + strand, within SM_b21539 at 1068.613 kb on + strand, within SM_b21539 at 1068.867 kb on - strand, within SM_b21539
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,066,092 + SM_b21537 0.23 -1.2 1,066,092 + SM_b21537 0.23 +0.2 1,066,092 + SM_b21537 0.23 -0.3 1,066,123 - SM_b21537 0.26 +0.1 1,066,161 + SM_b21537 0.29 +0.1 1,066,161 + SM_b21537 0.29 -0.5 1,066,162 - SM_b21537 0.29 +0.2 1,066,162 - SM_b21537 0.29 -0.1 1,066,162 - SM_b21537 0.29 +0.5 1,066,162 - SM_b21537 0.29 +0.1 1,066,162 - SM_b21537 0.29 +0.5 1,066,162 - SM_b21537 0.29 -0.1 1,066,163 + SM_b21537 0.29 -0.6 1,066,164 - SM_b21537 0.29 -0.0 1,066,164 - SM_b21537 0.29 +0.1 1,066,164 - SM_b21537 0.29 +0.3 1,066,164 - SM_b21537 0.29 -0.0 1,066,164 - SM_b21537 0.29 -1.0 1,066,164 - SM_b21537 0.29 -0.0 1,066,293 + SM_b21537 0.41 -1.6 1,066,294 - SM_b21537 0.41 -0.0 1,066,294 - SM_b21537 0.41 +1.6 1,066,512 + SM_b21537 0.60 +0.2 1,066,512 + SM_b21537 0.60 +0.2 1,066,512 + SM_b21537 0.60 +0.1 1,066,513 - SM_b21537 0.60 +5.4 1,066,542 - SM_b21537 0.62 +0.3 1,066,542 - SM_b21537 0.62 +2.0 1,066,542 - SM_b21537 0.62 +0.2 1,066,767 + SM_b21537 0.82 +1.0 1,066,768 - SM_b21537 0.82 -0.6 1,066,768 - SM_b21537 0.82 +0.2 1,066,768 - SM_b21537 0.82 +0.2 1,066,800 + SM_b21537 0.85 +0.8 1,066,800 + SM_b21537 0.85 +0.4 1,067,107 - -0.3 1,067,272 - SM_b21538 0.21 +0.2 1,067,272 - SM_b21538 0.21 -0.8 1,067,355 + SM_b21538 0.28 -0.2 1,067,356 - SM_b21538 0.28 +0.0 1,067,545 - SM_b21538 0.42 -0.8 1,067,619 + SM_b21538 0.48 -0.5 1,067,620 - SM_b21538 0.48 +0.8 1,067,620 - SM_b21538 0.48 -0.1 1,067,620 - SM_b21538 0.48 -0.2 1,067,637 + SM_b21538 0.50 -0.4 1,067,637 + SM_b21538 0.50 -0.2 1,067,637 + SM_b21538 0.50 -0.6 1,067,652 + SM_b21538 0.51 -0.1 1,067,653 - SM_b21538 0.51 -0.6 1,067,653 - SM_b21538 0.51 -0.5 1,067,653 - SM_b21538 0.51 +0.5 1,067,653 - SM_b21538 0.51 +0.3 1,067,802 + SM_b21538 0.63 -2.1 1,067,802 + SM_b21538 0.63 -1.6 1,067,803 - SM_b21538 0.63 -0.5 1,067,803 - SM_b21538 0.63 +0.3 1,067,874 + SM_b21538 0.68 -0.2 1,067,874 + SM_b21538 0.68 -0.2 1,067,874 + SM_b21538 0.68 -0.9 1,067,875 - SM_b21538 0.68 -0.1 1,067,875 - SM_b21538 0.68 +0.2 1,067,875 - SM_b21538 0.68 -1.1 1,067,875 - SM_b21538 0.68 +1.4 1,067,875 - SM_b21538 0.68 -0.4 1,067,916 + SM_b21538 0.72 -0.8 1,068,325 - -0.6 1,068,358 - -0.6 1,068,452 + SM_b21539 0.12 -0.7 1,068,453 - SM_b21539 0.12 -2.9 1,068,584 + +2.0 1,068,584 + SM_b21539 0.21 -0.3 1,068,613 + SM_b21539 0.23 -0.4 1,068,613 + SM_b21539 0.23 -1.7 1,068,867 - SM_b21539 0.41 -1.6
Or see this region's nucleotide sequence