Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21499 and SM_b21500 overlap by 4 nucleotides SM_b21500 and SM_b21501 are separated by 55 nucleotides SM_b21501 and SM_b21502 overlap by 4 nucleotides
SM_b21499: SM_b21499 - hypothetical protein, at 1,422,859 to 1,425,018
_b21499
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
SM_b21501: SM_b21501 - hypothetical protein, at 1,426,114 to 1,426,476
_b21501
SM_b21502: SM_b21502 - glycosyltransferase, at 1,426,473 to 1,427,642
_b21502
Position (kb)
1425
1426
1427 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1424.025 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.291 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.597 kb on + strand, within SM_b21499 at 1424.598 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1425.172 kb on + strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.263 kb on + strand, within SM_b21500 at 1425.264 kb on - strand, within SM_b21500 at 1425.310 kb on + strand, within SM_b21500 at 1425.311 kb on - strand, within SM_b21500 at 1425.364 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.547 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1426.051 kb on - strand at 1426.214 kb on - strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.281 kb on + strand, within SM_b21501 at 1426.418 kb on + strand, within SM_b21501 at 1426.529 kb on + strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.530 kb on - strand at 1426.531 kb on + strand at 1426.870 kb on + strand, within SM_b21502 at 1426.936 kb on + strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.937 kb on - strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.996 kb on + strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1426.997 kb on - strand, within SM_b21502 at 1427.016 kb on + strand, within SM_b21502
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,424,025 + SM_b21499 0.54 -0.4 1,424,030 + SM_b21499 0.54 -1.1 1,424,030 + SM_b21499 0.54 -1.0 1,424,031 - SM_b21499 0.54 -0.9 1,424,031 - SM_b21499 0.54 -0.6 1,424,291 + SM_b21499 0.66 -0.3 1,424,402 + SM_b21499 0.71 -0.3 1,424,402 + SM_b21499 0.71 -0.7 1,424,564 + SM_b21499 0.79 +0.1 1,424,564 + SM_b21499 0.79 -2.5 1,424,597 + SM_b21499 0.80 -0.5 1,424,598 - SM_b21499 0.81 -1.1 1,424,694 - SM_b21499 0.85 -0.0 1,424,694 - SM_b21499 0.85 +2.6 1,424,786 - SM_b21499 0.89 -0.0 1,424,786 - SM_b21499 0.89 -0.8 1,425,172 + SM_b21500 0.15 -0.9 1,425,173 - SM_b21500 0.15 +0.4 1,425,173 - SM_b21500 0.15 +0.2 1,425,263 + SM_b21500 0.24 +0.6 1,425,264 - SM_b21500 0.24 +1.0 1,425,310 + SM_b21500 0.28 +0.4 1,425,311 - SM_b21500 0.28 -0.1 1,425,364 + SM_b21500 0.33 +0.1 1,425,390 + SM_b21500 0.36 +0.6 1,425,390 + SM_b21500 0.36 -1.6 1,425,412 + SM_b21500 0.38 -0.2 1,425,412 + SM_b21500 0.38 +0.5 1,425,413 - SM_b21500 0.38 -0.1 1,425,413 - SM_b21500 0.38 +1.1 1,425,547 + SM_b21500 0.51 +1.5 1,425,596 + SM_b21500 0.56 +0.5 1,425,596 + SM_b21500 0.56 +0.3 1,425,814 + SM_b21500 0.77 -0.4 1,425,814 + SM_b21500 0.77 +0.1 1,425,815 - SM_b21500 0.77 -0.1 1,425,815 - SM_b21500 0.77 -0.6 1,426,051 - -0.4 1,426,214 - SM_b21501 0.28 -0.8 1,426,281 + SM_b21501 0.46 -1.0 1,426,281 + SM_b21501 0.46 -1.1 1,426,281 + SM_b21501 0.46 -0.1 1,426,418 + SM_b21501 0.84 +0.1 1,426,529 + -0.6 1,426,530 - +0.2 1,426,530 - +0.2 1,426,530 - +0.9 1,426,530 - -0.1 1,426,530 - -0.4 1,426,531 + -0.8 1,426,870 + SM_b21502 0.34 +0.3 1,426,936 + SM_b21502 0.40 +0.1 1,426,937 - SM_b21502 0.40 +0.4 1,426,937 - SM_b21502 0.40 +0.1 1,426,996 + SM_b21502 0.45 +0.0 1,426,996 + SM_b21502 0.45 +0.7 1,426,997 - SM_b21502 0.45 +0.3 1,426,997 - SM_b21502 0.45 -0.8 1,427,016 + SM_b21502 0.46 +1.0
Or see this region's nucleotide sequence