Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21498 and SM_b21499 are separated by 2 nucleotides SM_b21499 and SM_b21500 overlap by 4 nucleotides
SM_b21498: SM_b21498 - acriflavin resistance protein, at 1,419,623 to 1,422,856
_b21498
SM_b21499: SM_b21499 - hypothetical protein, at 1,422,859 to 1,425,018
_b21499
SM_b21500: SM_b21500 - glycosyltransferase, at 1,425,015 to 1,426,058
_b21500
Position (kb)
1422
1423
1424
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1421.883 kb on - strand, within SM_b21498 at 1421.883 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.886 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1421.986 kb on - strand, within SM_b21498 at 1422.038 kb on + strand, within SM_b21498 at 1422.068 kb on + strand, within SM_b21498 at 1422.069 kb on - strand, within SM_b21498 at 1422.179 kb on + strand, within SM_b21498 at 1422.269 kb on + strand, within SM_b21498 at 1422.270 kb on - strand, within SM_b21498 at 1422.291 kb on - strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.392 kb on + strand, within SM_b21498 at 1422.393 kb on - strand, within SM_b21498 at 1422.689 kb on + strand at 1422.689 kb on + strand at 1422.690 kb on - strand at 1422.860 kb on + strand at 1422.879 kb on - strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.025 kb on + strand at 1423.026 kb on - strand at 1423.272 kb on + strand, within SM_b21499 at 1423.501 kb on + strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.502 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.582 kb on - strand, within SM_b21499 at 1423.670 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.675 kb on + strand, within SM_b21499 at 1423.772 kb on + strand, within SM_b21499 at 1423.830 kb on - strand, within SM_b21499 at 1423.886 kb on + strand, within SM_b21499 at 1423.886 kb on + strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand, within SM_b21499 at 1423.887 kb on - strand at 1423.962 kb on - strand, within SM_b21499 at 1424.025 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.030 kb on + strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.031 kb on - strand, within SM_b21499 at 1424.291 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.402 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.564 kb on + strand, within SM_b21499 at 1424.597 kb on + strand, within SM_b21499 at 1424.598 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.694 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1424.786 kb on - strand, within SM_b21499 at 1425.172 kb on + strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.173 kb on - strand, within SM_b21500 at 1425.263 kb on + strand, within SM_b21500 at 1425.264 kb on - strand, within SM_b21500 at 1425.310 kb on + strand, within SM_b21500 at 1425.311 kb on - strand, within SM_b21500 at 1425.364 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.390 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.412 kb on + strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.413 kb on - strand, within SM_b21500 at 1425.547 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.596 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.814 kb on + strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500 at 1425.815 kb on - strand, within SM_b21500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,421,883 - SM_b21498 0.70 +0.8 1,421,883 - SM_b21498 0.70 +1.5 1,421,886 - SM_b21498 0.70 -0.6 1,421,886 - SM_b21498 0.70 +0.8 1,421,886 - SM_b21498 0.70 -0.5 1,421,986 - SM_b21498 0.73 -0.4 1,421,986 - SM_b21498 0.73 +0.5 1,422,038 + SM_b21498 0.75 +0.0 1,422,068 + SM_b21498 0.76 -0.2 1,422,069 - SM_b21498 0.76 +0.8 1,422,179 + SM_b21498 0.79 -1.8 1,422,269 + SM_b21498 0.82 +1.0 1,422,270 - SM_b21498 0.82 -0.9 1,422,291 - SM_b21498 0.82 -1.6 1,422,392 + SM_b21498 0.86 -0.3 1,422,392 + SM_b21498 0.86 -1.0 1,422,393 - SM_b21498 0.86 +0.4 1,422,689 + +0.1 1,422,689 + -0.3 1,422,690 - +1.3 1,422,860 + -0.5 1,422,879 - -0.7 1,423,025 + +1.6 1,423,025 + -0.2 1,423,025 + +0.4 1,423,026 - -1.1 1,423,272 + SM_b21499 0.19 -0.6 1,423,501 + SM_b21499 0.30 +0.3 1,423,502 - SM_b21499 0.30 +0.2 1,423,502 - SM_b21499 0.30 +0.3 1,423,582 - SM_b21499 0.33 -0.2 1,423,582 - SM_b21499 0.33 -0.4 1,423,670 + SM_b21499 0.38 -2.4 1,423,675 + SM_b21499 0.38 -0.7 1,423,675 + SM_b21499 0.38 +0.4 1,423,772 + SM_b21499 0.42 -0.9 1,423,830 - SM_b21499 0.45 +0.2 1,423,886 + SM_b21499 0.48 -0.3 1,423,886 + SM_b21499 0.48 +0.1 1,423,887 - SM_b21499 0.48 -0.6 1,423,887 - SM_b21499 0.48 -0.5 1,423,887 - SM_b21499 0.48 -0.6 1,423,887 - SM_b21499 0.48 -0.0 1,423,887 - +0.0 1,423,962 - SM_b21499 0.51 -0.1 1,424,025 + SM_b21499 0.54 -0.4 1,424,030 + SM_b21499 0.54 -1.1 1,424,030 + SM_b21499 0.54 -1.0 1,424,031 - SM_b21499 0.54 -0.9 1,424,031 - SM_b21499 0.54 -0.6 1,424,291 + SM_b21499 0.66 -0.3 1,424,402 + SM_b21499 0.71 -0.3 1,424,402 + SM_b21499 0.71 -0.7 1,424,564 + SM_b21499 0.79 +0.1 1,424,564 + SM_b21499 0.79 -2.5 1,424,597 + SM_b21499 0.80 -0.5 1,424,598 - SM_b21499 0.81 -1.1 1,424,694 - SM_b21499 0.85 -0.0 1,424,694 - SM_b21499 0.85 +2.6 1,424,786 - SM_b21499 0.89 -0.0 1,424,786 - SM_b21499 0.89 -0.8 1,425,172 + SM_b21500 0.15 -0.9 1,425,173 - SM_b21500 0.15 +0.4 1,425,173 - SM_b21500 0.15 +0.2 1,425,263 + SM_b21500 0.24 +0.6 1,425,264 - SM_b21500 0.24 +1.0 1,425,310 + SM_b21500 0.28 +0.4 1,425,311 - SM_b21500 0.28 -0.1 1,425,364 + SM_b21500 0.33 +0.1 1,425,390 + SM_b21500 0.36 +0.6 1,425,390 + SM_b21500 0.36 -1.6 1,425,412 + SM_b21500 0.38 -0.2 1,425,412 + SM_b21500 0.38 +0.5 1,425,413 - SM_b21500 0.38 -0.1 1,425,413 - SM_b21500 0.38 +1.1 1,425,547 + SM_b21500 0.51 +1.5 1,425,596 + SM_b21500 0.56 +0.5 1,425,596 + SM_b21500 0.56 +0.3 1,425,814 + SM_b21500 0.77 -0.4 1,425,814 + SM_b21500 0.77 +0.1 1,425,815 - SM_b21500 0.77 -0.1 1,425,815 - SM_b21500 0.77 -0.6
Or see this region's nucleotide sequence