Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21478 and SM_b21479 are separated by 316 nucleotides SM_b21479 and SM_b21480 are separated by 44 nucleotides SM_b21480 and SM_b21481 overlap by 7 nucleotides SM_b21481 and SM_b21482 are separated by 296 nucleotides
SM_b21478: SM_b21478 - hypothetical protein, at 1,402,093 to 1,402,710
_b21478
SM_b21479: SM_b21479 - hypothetical protein, at 1,403,027 to 1,403,329
_b21479
SM_b21480: SM_b21480 - hypothetical protein, at 1,403,374 to 1,403,634
_b21480
SM_b21481: SM_b21481 - hypothetical protein, at 1,403,628 to 1,404,104
_b21481
SM_b21482: SM_b21482 - hypothetical protein, at 1,404,401 to 1,404,703
_b21482
Position (kb)
1403
1404 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1402.401 kb on + strand, within SM_b21478 at 1402.402 kb on - strand at 1402.402 kb on - strand, within SM_b21478 at 1402.514 kb on - strand, within SM_b21478 at 1402.668 kb on + strand at 1402.669 kb on - strand at 1402.669 kb on - strand at 1402.671 kb on + strand at 1402.671 kb on + strand at 1402.672 kb on - strand at 1402.684 kb on - strand at 1402.686 kb on + strand at 1402.686 kb on + strand at 1402.686 kb on + strand at 1403.285 kb on + strand, within SM_b21479 at 1403.285 kb on + strand, within SM_b21479 at 1403.393 kb on - strand at 1403.393 kb on - strand at 1403.422 kb on - strand, within SM_b21480 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1404.026 kb on + strand, within SM_b21481 at 1404.063 kb on + strand at 1404.063 kb on + strand at 1404.064 kb on - strand at 1404.064 kb on - strand at 1404.094 kb on + strand at 1404.095 kb on - strand at 1404.195 kb on + strand at 1404.195 kb on + strand at 1404.196 kb on - strand at 1404.297 kb on + strand at 1404.298 kb on - strand at 1404.298 kb on - strand at 1404.352 kb on - strand at 1404.364 kb on + strand at 1404.602 kb on + strand, within SM_b21482 at 1404.603 kb on - strand, within SM_b21482
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,402,401 + SM_b21478 0.50 +0.4 1,402,402 - -0.3 1,402,402 - SM_b21478 0.50 +0.4 1,402,514 - SM_b21478 0.68 -0.0 1,402,668 + -1.0 1,402,669 - -0.1 1,402,669 - -0.4 1,402,671 + -0.1 1,402,671 + -0.9 1,402,672 - -1.1 1,402,684 - -0.1 1,402,686 + -1.7 1,402,686 + -0.9 1,402,686 + +1.2 1,403,285 + SM_b21479 0.85 +0.3 1,403,285 + SM_b21479 0.85 -0.2 1,403,393 - -0.5 1,403,393 - +0.5 1,403,422 - SM_b21480 0.18 -0.7 1,403,919 + SM_b21481 0.61 -2.1 1,403,919 + SM_b21481 0.61 -0.1 1,403,919 + SM_b21481 0.61 +1.5 1,403,919 + SM_b21481 0.61 -0.2 1,403,919 + SM_b21481 0.61 +0.1 1,403,920 - SM_b21481 0.61 +0.2 1,403,920 - SM_b21481 0.61 +0.0 1,403,920 - SM_b21481 0.61 +2.8 1,403,920 - SM_b21481 0.61 -0.5 1,403,920 - SM_b21481 0.61 +0.0 1,403,920 - SM_b21481 0.61 -0.5 1,403,920 - SM_b21481 0.61 -0.5 1,404,026 + SM_b21481 0.83 -0.6 1,404,063 + -0.3 1,404,063 + -0.3 1,404,064 - -0.2 1,404,064 - -0.1 1,404,094 + +1.3 1,404,095 - -0.7 1,404,195 + -0.6 1,404,195 + +0.6 1,404,196 - -0.2 1,404,297 + -0.3 1,404,298 - +0.3 1,404,298 - -0.5 1,404,352 - -0.2 1,404,364 + -0.4 1,404,602 + SM_b21482 0.66 -0.8 1,404,603 - SM_b21482 0.67 -0.3
Or see this region's nucleotide sequence