Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21464 and SM_b21465 are separated by 100 nucleotides SM_b21465 and SM_b21466 overlap by 4 nucleotides
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367
_b21465
SM_b21466: SM_b21466 - ABC transporter ATP-binding protein, at 1,393,364 to 1,395,124
_b21466
Position (kb)
1392
1393
1394 Strain fitness (log2 ratio)
-2
-1
0
1 at 1391.237 kb on + strand at 1391.299 kb on + strand, within SM_b21464 at 1391.300 kb on - strand, within SM_b21464 at 1391.333 kb on + strand, within SM_b21464 at 1391.420 kb on + strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.470 kb on + strand, within SM_b21464 at 1391.622 kb on + strand, within SM_b21464 at 1391.712 kb on - strand, within SM_b21464 at 1391.733 kb on - strand, within SM_b21464 at 1391.778 kb on + strand, within SM_b21464 at 1391.779 kb on - strand, within SM_b21464 at 1391.945 kb on + strand at 1391.945 kb on + strand at 1391.967 kb on + strand at 1391.992 kb on + strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1392.027 kb on - strand at 1392.027 kb on - strand at 1392.029 kb on + strand at 1392.157 kb on + strand at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.221 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.822 kb on + strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.933 kb on + strand, within SM_b21465 at 1393.343 kb on + strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.344 kb on - strand at 1393.737 kb on + strand, within SM_b21466 at 1393.738 kb on - strand, within SM_b21466
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,391,237 + +0.2 1,391,299 + SM_b21464 0.16 +0.0 1,391,300 - SM_b21464 0.16 +0.8 1,391,333 + SM_b21464 0.21 +0.4 1,391,420 + SM_b21464 0.32 -0.3 1,391,421 - SM_b21464 0.32 -0.2 1,391,421 - SM_b21464 0.32 +0.1 1,391,470 + SM_b21464 0.38 -1.3 1,391,622 + SM_b21464 0.58 -0.3 1,391,712 - SM_b21464 0.70 -2.2 1,391,733 - SM_b21464 0.72 -0.3 1,391,778 + SM_b21464 0.78 +0.2 1,391,779 - SM_b21464 0.78 +0.3 1,391,945 + +0.4 1,391,945 + -0.2 1,391,967 + +0.3 1,391,992 + +0.1 1,391,993 - +0.1 1,391,993 - +1.0 1,391,993 - +0.3 1,392,027 - -0.1 1,392,027 - +0.3 1,392,029 + -1.3 1,392,157 + +0.2 1,392,220 + SM_b21465 0.13 +0.0 1,392,220 + SM_b21465 0.13 -0.6 1,392,220 + SM_b21465 0.13 -1.3 1,392,221 - SM_b21465 0.13 +0.5 1,392,370 - SM_b21465 0.24 -0.8 1,392,370 - SM_b21465 0.24 +0.3 1,392,452 + SM_b21465 0.31 +0.4 1,392,452 + SM_b21465 0.31 +0.1 1,392,545 - SM_b21465 0.38 +1.0 1,392,545 - SM_b21465 0.38 +0.4 1,392,822 + SM_b21465 0.59 +0.3 1,392,823 - SM_b21465 0.59 +0.4 1,392,823 - SM_b21465 0.59 +1.2 1,392,933 + SM_b21465 0.67 +0.2 1,393,343 + -0.3 1,393,344 - +0.1 1,393,344 - +0.0 1,393,344 - -0.3 1,393,344 - -0.1 1,393,737 + SM_b21466 0.21 +0.0 1,393,738 - SM_b21466 0.21 +0.5
Or see this region's nucleotide sequence