Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21416 and SM_b21417 overlap by 4 nucleotides SM_b21417 and SM_b21418 are separated by 6 nucleotides
SM_b21416: SM_b21416 - glucose-1-phosphate cytidylyltransferase, at 1,345,948 to 1,346,715
_b21416
SM_b21417: SM_b21417 - CDP-glucose 4,6-dehydratase, at 1,346,712 to 1,347,782
_b21417
SM_b21418: SM_b21418 - NDP-hexose 3-C-methyltransferase, at 1,347,789 to 1,349,021
_b21418
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1345.766 kb on + strand at 1345.766 kb on + strand at 1345.798 kb on + strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.801 kb on - strand at 1345.927 kb on - strand at 1345.976 kb on - strand at 1346.019 kb on + strand at 1346.019 kb on + strand at 1346.020 kb on - strand at 1346.068 kb on + strand, within SM_b21416 at 1346.077 kb on + strand, within SM_b21416 at 1346.078 kb on - strand at 1346.097 kb on + strand, within SM_b21416 at 1346.098 kb on - strand, within SM_b21416 at 1346.119 kb on + strand, within SM_b21416 at 1346.120 kb on - strand, within SM_b21416 at 1346.134 kb on + strand, within SM_b21416 at 1346.135 kb on - strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.146 kb on + strand, within SM_b21416 at 1346.147 kb on - strand, within SM_b21416 at 1346.200 kb on + strand, within SM_b21416 at 1346.201 kb on - strand, within SM_b21416 at 1346.321 kb on - strand, within SM_b21416 at 1346.422 kb on + strand, within SM_b21416 at 1346.423 kb on - strand, within SM_b21416 at 1346.423 kb on - strand, within SM_b21416 at 1346.464 kb on - strand, within SM_b21416 at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.800 kb on + strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.801 kb on - strand at 1346.836 kb on - strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.917 kb on + strand, within SM_b21417 at 1346.918 kb on - strand, within SM_b21417 at 1346.979 kb on - strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.009 kb on + strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.010 kb on - strand, within SM_b21417 at 1347.127 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.244 kb on - strand, within SM_b21417 at 1347.248 kb on + strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.249 kb on - strand, within SM_b21417 at 1347.429 kb on + strand, within SM_b21417 at 1347.705 kb on + strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.758 kb on - strand at 1347.781 kb on - strand at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.005 kb on + strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.006 kb on - strand, within SM_b21418 at 1348.050 kb on + strand, within SM_b21418 at 1348.138 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.380 kb on - strand, within SM_b21418 at 1348.437 kb on + strand, within SM_b21418 at 1348.449 kb on + strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.450 kb on - strand, within SM_b21418 at 1348.455 kb on + strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.456 kb on - strand, within SM_b21418 at 1348.481 kb on + strand, within SM_b21418 at 1348.482 kb on - strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418 at 1348.650 kb on + strand, within SM_b21418
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,345,766 + -1.1 1,345,766 + +0.1 1,345,798 + +0.6 1,345,801 - -2.0 1,345,801 - -0.5 1,345,801 - -0.7 1,345,801 - -0.0 1,345,801 - +0.4 1,345,927 - +0.7 1,345,976 - -0.5 1,346,019 + +0.4 1,346,019 + +0.0 1,346,020 - +0.2 1,346,068 + SM_b21416 0.16 +0.5 1,346,077 + SM_b21416 0.17 +0.5 1,346,078 - +2.4 1,346,097 + SM_b21416 0.19 -0.0 1,346,098 - SM_b21416 0.20 +0.6 1,346,119 + SM_b21416 0.22 +0.1 1,346,120 - SM_b21416 0.22 +0.7 1,346,134 + SM_b21416 0.24 +0.0 1,346,135 - SM_b21416 0.24 +0.7 1,346,146 + SM_b21416 0.26 -1.8 1,346,146 + SM_b21416 0.26 +0.8 1,346,146 + SM_b21416 0.26 +0.8 1,346,147 - SM_b21416 0.26 +0.6 1,346,200 + SM_b21416 0.33 -0.1 1,346,201 - SM_b21416 0.33 +0.7 1,346,321 - SM_b21416 0.49 +0.5 1,346,422 + SM_b21416 0.62 +0.3 1,346,423 - SM_b21416 0.62 +0.6 1,346,423 - SM_b21416 0.62 +0.4 1,346,464 - SM_b21416 0.67 +0.6 1,346,800 + +1.3 1,346,800 + +0.4 1,346,800 + +0.3 1,346,800 + +0.3 1,346,801 - +1.4 1,346,801 - +1.6 1,346,801 - +0.2 1,346,801 - +0.8 1,346,801 - -0.7 1,346,836 - SM_b21417 0.12 -0.0 1,346,917 + SM_b21417 0.19 +1.5 1,346,917 + SM_b21417 0.19 +0.6 1,346,917 + SM_b21417 0.19 +0.2 1,346,918 - SM_b21417 0.19 +0.8 1,346,979 - SM_b21417 0.25 +1.6 1,347,009 + SM_b21417 0.28 +0.7 1,347,009 + SM_b21417 0.28 -0.0 1,347,009 + SM_b21417 0.28 +0.9 1,347,010 - SM_b21417 0.28 -0.2 1,347,010 - SM_b21417 0.28 +0.4 1,347,127 - SM_b21417 0.39 +1.3 1,347,244 - SM_b21417 0.50 +0.3 1,347,244 - SM_b21417 0.50 +0.4 1,347,244 - SM_b21417 0.50 -0.3 1,347,248 + SM_b21417 0.50 +0.2 1,347,249 - SM_b21417 0.50 +0.4 1,347,249 - SM_b21417 0.50 +0.9 1,347,429 + SM_b21417 0.67 +0.2 1,347,705 + +0.0 1,347,758 - -0.6 1,347,758 - +0.8 1,347,758 - +0.4 1,347,758 - -0.3 1,347,781 - -0.3 1,348,005 + SM_b21418 0.18 -0.1 1,348,005 + SM_b21418 0.18 +0.2 1,348,005 + SM_b21418 0.18 -0.0 1,348,005 + SM_b21418 0.18 +1.0 1,348,005 + SM_b21418 0.18 +0.3 1,348,005 + SM_b21418 0.18 +0.4 1,348,006 - SM_b21418 0.18 +0.9 1,348,006 - SM_b21418 0.18 +1.1 1,348,006 - SM_b21418 0.18 +0.4 1,348,006 - SM_b21418 0.18 -1.0 1,348,050 + SM_b21418 0.21 -0.4 1,348,138 - SM_b21418 0.28 +0.6 1,348,380 - SM_b21418 0.48 +0.4 1,348,380 - SM_b21418 0.48 +0.2 1,348,437 + SM_b21418 0.53 -0.5 1,348,449 + SM_b21418 0.54 +1.8 1,348,450 - SM_b21418 0.54 +0.3 1,348,450 - SM_b21418 0.54 +0.4 1,348,450 - SM_b21418 0.54 +0.4 1,348,450 - SM_b21418 0.54 +0.1 1,348,455 + SM_b21418 0.54 -0.5 1,348,456 - SM_b21418 0.54 -0.6 1,348,456 - SM_b21418 0.54 +0.2 1,348,481 + SM_b21418 0.56 +0.6 1,348,482 - SM_b21418 0.56 +5.4 1,348,650 + SM_b21418 0.70 +0.4 1,348,650 + SM_b21418 0.70 -0.5
Or see this region's nucleotide sequence