Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21400 and SM_b21401 are separated by 48 nucleotides SM_b21401 and SM_b21402 are separated by 548 nucleotides
SM_b21400: SM_b21400 - hypothetical protein, at 1,331,585 to 1,331,821
_b21400
SM_b21401: SM_b21401 - hypothetical protein, at 1,331,870 to 1,332,220
_b21401
SM_b21402: SM_b21402 - hypothetical protein, at 1,332,769 to 1,333,932
_b21402
Position (kb)
1332
1333
1334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1331.828 kb on + strand at 1331.828 kb on + strand at 1331.828 kb on + strand at 1331.829 kb on - strand at 1331.829 kb on - strand at 1331.881 kb on + strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1331.882 kb on - strand at 1332.000 kb on + strand, within SM_b21401 at 1332.000 kb on + strand, within SM_b21401 at 1332.001 kb on - strand, within SM_b21401 at 1332.005 kb on + strand, within SM_b21401 at 1332.006 kb on - strand, within SM_b21401 at 1332.041 kb on - strand, within SM_b21401 at 1332.172 kb on + strand, within SM_b21401 at 1332.172 kb on + strand, within SM_b21401 at 1332.217 kb on - strand at 1332.217 kb on - strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.221 kb on + strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.222 kb on - strand at 1332.283 kb on + strand at 1332.284 kb on - strand at 1332.352 kb on + strand at 1332.353 kb on - strand at 1332.455 kb on - strand at 1332.501 kb on + strand at 1332.502 kb on - strand at 1332.507 kb on + strand at 1332.549 kb on - strand at 1332.663 kb on + strand at 1332.664 kb on - strand at 1332.742 kb on - strand at 1332.757 kb on + strand at 1332.786 kb on + strand at 1332.854 kb on - strand at 1332.854 kb on - strand at 1332.854 kb on - strand at 1332.907 kb on + strand, within SM_b21402 at 1332.907 kb on + strand, within SM_b21402 at 1332.907 kb on + strand, within SM_b21402 at 1332.907 kb on + strand, within SM_b21402 at 1332.907 kb on + strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.908 kb on - strand, within SM_b21402 at 1332.909 kb on + strand, within SM_b21402 at 1332.910 kb on - strand, within SM_b21402 at 1332.910 kb on - strand, within SM_b21402 at 1332.934 kb on + strand, within SM_b21402 at 1332.934 kb on + strand, within SM_b21402 at 1332.935 kb on - strand, within SM_b21402 at 1332.935 kb on - strand, within SM_b21402 at 1333.123 kb on + strand, within SM_b21402 at 1333.124 kb on - strand, within SM_b21402 at 1333.124 kb on - strand, within SM_b21402 at 1333.124 kb on - strand, within SM_b21402 at 1333.124 kb on - strand, within SM_b21402 at 1333.124 kb on - strand, within SM_b21402 at 1333.152 kb on + strand, within SM_b21402 at 1333.153 kb on - strand, within SM_b21402 at 1333.229 kb on + strand, within SM_b21402 at 1333.230 kb on - strand, within SM_b21402 at 1333.251 kb on + strand, within SM_b21402 at 1333.258 kb on + strand, within SM_b21402 at 1333.258 kb on + strand, within SM_b21402 at 1333.258 kb on + strand, within SM_b21402 at 1333.284 kb on - strand, within SM_b21402 at 1333.360 kb on + strand, within SM_b21402 at 1333.361 kb on - strand, within SM_b21402 at 1333.523 kb on - strand, within SM_b21402 at 1333.631 kb on + strand, within SM_b21402 at 1333.631 kb on + strand, within SM_b21402 at 1333.632 kb on - strand, within SM_b21402 at 1333.632 kb on - strand, within SM_b21402 at 1333.632 kb on - strand, within SM_b21402 at 1333.632 kb on - strand, within SM_b21402 at 1333.677 kb on - strand, within SM_b21402 at 1333.762 kb on + strand, within SM_b21402 at 1333.786 kb on - strand, within SM_b21402 at 1333.792 kb on + strand, within SM_b21402 at 1333.793 kb on - strand, within SM_b21402 at 1333.793 kb on - strand, within SM_b21402 at 1333.793 kb on - strand, within SM_b21402 at 1333.793 kb on - strand, within SM_b21402 at 1333.798 kb on + strand, within SM_b21402 at 1333.799 kb on - strand, within SM_b21402 at 1333.799 kb on - strand, within SM_b21402 at 1333.834 kb on + strand at 1333.834 kb on + strand at 1333.836 kb on + strand at 1333.836 kb on + strand at 1333.836 kb on + strand at 1333.836 kb on + strand at 1333.836 kb on + strand at 1333.837 kb on - strand at 1333.837 kb on - strand at 1333.948 kb on + strand at 1333.949 kb on - strand at 1333.998 kb on - strand at 1334.025 kb on + strand at 1334.026 kb on - strand at 1334.026 kb on - strand at 1334.038 kb on + strand at 1334.039 kb on - strand at 1334.070 kb on - strand at 1334.106 kb on + strand at 1334.167 kb on + strand at 1334.168 kb on - strand at 1334.224 kb on + strand at 1334.224 kb on + strand at 1334.224 kb on + strand at 1334.225 kb on - strand at 1334.472 kb on + strand at 1334.472 kb on + strand at 1334.657 kb on - strand at 1334.665 kb on - strand at 1334.816 kb on + strand at 1334.817 kb on - strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.881 kb on - strand at 1334.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,331,828 + +1.6 1,331,828 + -1.3 1,331,828 + +0.6 1,331,829 - -0.2 1,331,829 - -1.8 1,331,881 + -0.4 1,331,882 - -0.8 1,331,882 - -0.1 1,331,882 - -1.1 1,331,882 - +0.3 1,331,882 - +0.2 1,331,882 - -0.7 1,332,000 + SM_b21401 0.37 +0.7 1,332,000 + SM_b21401 0.37 +0.1 1,332,001 - SM_b21401 0.37 -0.1 1,332,005 + SM_b21401 0.38 -0.3 1,332,006 - SM_b21401 0.39 -0.0 1,332,041 - SM_b21401 0.49 -0.4 1,332,172 + SM_b21401 0.86 -0.4 1,332,172 + SM_b21401 0.86 -0.9 1,332,217 - -1.5 1,332,217 - -0.1 1,332,221 + +0.4 1,332,221 + -0.9 1,332,221 + -0.1 1,332,221 + -0.8 1,332,221 + -0.0 1,332,221 + +0.2 1,332,222 - +0.7 1,332,222 - -0.0 1,332,222 - -0.9 1,332,222 - +0.3 1,332,222 - +0.2 1,332,222 - -0.3 1,332,283 + -1.6 1,332,284 - +1.0 1,332,352 + +0.8 1,332,353 - -0.6 1,332,455 - -1.1 1,332,501 + -0.3 1,332,502 - +0.1 1,332,507 + +1.4 1,332,549 - +2.0 1,332,663 + -0.2 1,332,664 - +0.6 1,332,742 - +1.0 1,332,757 + -0.6 1,332,786 + -0.3 1,332,854 - -0.7 1,332,854 - +0.3 1,332,854 - +0.1 1,332,907 + SM_b21402 0.12 -0.5 1,332,907 + SM_b21402 0.12 -0.8 1,332,907 + SM_b21402 0.12 +0.7 1,332,907 + SM_b21402 0.12 +0.8 1,332,907 + SM_b21402 0.12 +0.1 1,332,908 - SM_b21402 0.12 +0.4 1,332,908 - SM_b21402 0.12 +2.2 1,332,908 - SM_b21402 0.12 -0.8 1,332,908 - SM_b21402 0.12 +0.9 1,332,908 - SM_b21402 0.12 +0.8 1,332,908 - SM_b21402 0.12 +0.0 1,332,908 - SM_b21402 0.12 -0.4 1,332,908 - SM_b21402 0.12 +0.4 1,332,909 + SM_b21402 0.12 +1.1 1,332,910 - SM_b21402 0.12 +0.2 1,332,910 - SM_b21402 0.12 +0.1 1,332,934 + SM_b21402 0.14 -0.5 1,332,934 + SM_b21402 0.14 -0.2 1,332,935 - SM_b21402 0.14 +0.2 1,332,935 - SM_b21402 0.14 -0.7 1,333,123 + SM_b21402 0.30 +0.6 1,333,124 - SM_b21402 0.30 +0.9 1,333,124 - SM_b21402 0.30 +0.7 1,333,124 - SM_b21402 0.30 +0.4 1,333,124 - SM_b21402 0.30 -0.1 1,333,124 - SM_b21402 0.30 -1.1 1,333,152 + SM_b21402 0.33 -0.7 1,333,153 - SM_b21402 0.33 +0.5 1,333,229 + SM_b21402 0.40 -0.1 1,333,230 - SM_b21402 0.40 -0.2 1,333,251 + SM_b21402 0.41 +0.1 1,333,258 + SM_b21402 0.42 +0.1 1,333,258 + SM_b21402 0.42 +1.3 1,333,258 + SM_b21402 0.42 +0.3 1,333,284 - SM_b21402 0.44 -0.0 1,333,360 + SM_b21402 0.51 +0.3 1,333,361 - SM_b21402 0.51 +1.0 1,333,523 - SM_b21402 0.65 -0.0 1,333,631 + SM_b21402 0.74 +1.2 1,333,631 + SM_b21402 0.74 -0.1 1,333,632 - SM_b21402 0.74 -0.3 1,333,632 - SM_b21402 0.74 +1.3 1,333,632 - SM_b21402 0.74 +0.8 1,333,632 - SM_b21402 0.74 -0.5 1,333,677 - SM_b21402 0.78 +0.0 1,333,762 + SM_b21402 0.85 +1.0 1,333,786 - SM_b21402 0.87 +0.3 1,333,792 + SM_b21402 0.88 +1.4 1,333,793 - SM_b21402 0.88 +0.8 1,333,793 - SM_b21402 0.88 +0.4 1,333,793 - SM_b21402 0.88 +0.3 1,333,793 - SM_b21402 0.88 -0.2 1,333,798 + SM_b21402 0.88 -0.3 1,333,799 - SM_b21402 0.88 -0.4 1,333,799 - SM_b21402 0.88 +0.1 1,333,834 + -2.1 1,333,834 + -0.1 1,333,836 + +0.1 1,333,836 + +0.9 1,333,836 + +1.7 1,333,836 + +0.3 1,333,836 + -0.7 1,333,837 - +1.2 1,333,837 - +0.7 1,333,948 + -0.3 1,333,949 - -0.2 1,333,998 - -0.2 1,334,025 + +1.0 1,334,026 - +0.4 1,334,026 - +0.0 1,334,038 + +0.2 1,334,039 - +0.3 1,334,070 - -0.3 1,334,106 + -0.0 1,334,167 + +0.0 1,334,168 - -0.5 1,334,224 + -0.9 1,334,224 + -0.5 1,334,224 + -1.0 1,334,225 - -0.5 1,334,472 + +0.4 1,334,472 + -0.9 1,334,657 - -0.2 1,334,665 - -0.5 1,334,816 + -1.2 1,334,817 - -0.4 1,334,880 + +0.8 1,334,880 + -0.1 1,334,880 + +0.5 1,334,880 + -1.1 1,334,880 + -0.3 1,334,881 - +0.2 1,334,881 - -0.1
Or see this region's nucleotide sequence