Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21370 and SM_b21371 are separated by 7 nucleotides SM_b21371 and SM_b21372 are separated by 3 nucleotides SM_b21372 and SM_b21373 are separated by 111 nucleotides
SM_b21370: SM_b21370 - cytochrome c oxidase subunit I, at 1,033,638 to 1,036,163
_b21370
SM_b21371: SM_b21371 - hypothetical protein, at 1,036,171 to 1,036,542
_b21371
SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604
_b21372
SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data) , at 1,037,716 to 1,038,996
_b21373
Position (kb)
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.585 kb on + strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.586 kb on - strand, within SM_b21370 at 1035.588 kb on - strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.654 kb on + strand, within SM_b21370 at 1035.655 kb on - strand, within SM_b21370 at 1035.663 kb on + strand, within SM_b21370 at 1035.663 kb on + strand, within SM_b21370 at 1035.676 kb on - strand, within SM_b21370 at 1035.676 kb on - strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.793 kb on + strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.794 kb on - strand, within SM_b21370 at 1035.946 kb on - strand at 1035.960 kb on + strand at 1036.080 kb on + strand at 1036.080 kb on + strand at 1036.081 kb on - strand at 1036.081 kb on - strand at 1036.081 kb on - strand at 1036.092 kb on + strand at 1036.092 kb on + strand at 1036.092 kb on + strand at 1036.098 kb on + strand at 1036.098 kb on + strand at 1036.099 kb on - strand at 1036.264 kb on + strand, within SM_b21371 at 1036.264 kb on + strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.265 kb on - strand, within SM_b21371 at 1036.266 kb on + strand, within SM_b21371 at 1036.267 kb on - strand, within SM_b21371 at 1036.679 kb on + strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.680 kb on - strand, within SM_b21372 at 1036.716 kb on - strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.983 kb on - strand, within SM_b21372 at 1037.033 kb on + strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.142 kb on - strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.452 kb on + strand, within SM_b21372 at 1037.453 kb on - strand, within SM_b21372 at 1037.510 kb on + strand at 1037.511 kb on - strand at 1037.819 kb on + strand at 1037.928 kb on - strand, within SM_b21373 at 1037.944 kb on - strand, within SM_b21373 at 1037.945 kb on + strand, within SM_b21373 at 1037.993 kb on + strand, within SM_b21373 at 1037.994 kb on - strand, within SM_b21373 at 1038.278 kb on + strand at 1038.279 kb on - strand, within SM_b21373 at 1038.436 kb on + strand at 1038.437 kb on - strand, within SM_b21373 at 1038.437 kb on - strand, within SM_b21373
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,035,585 + SM_b21370 0.77 -1.3 1,035,585 + SM_b21370 0.77 -0.3 1,035,585 + SM_b21370 0.77 +1.4 1,035,585 + SM_b21370 0.77 -0.4 1,035,585 + SM_b21370 0.77 -0.7 1,035,585 + SM_b21370 0.77 -0.6 1,035,586 - SM_b21370 0.77 -1.7 1,035,586 - SM_b21370 0.77 +0.7 1,035,586 - SM_b21370 0.77 -0.0 1,035,586 - SM_b21370 0.77 +0.2 1,035,586 - SM_b21370 0.77 -1.7 1,035,588 - SM_b21370 0.77 +0.6 1,035,654 + SM_b21370 0.80 +0.2 1,035,654 + SM_b21370 0.80 +0.1 1,035,654 + SM_b21370 0.80 -1.1 1,035,655 - SM_b21370 0.80 -1.0 1,035,663 + SM_b21370 0.80 -0.8 1,035,663 + SM_b21370 0.80 -1.7 1,035,676 - SM_b21370 0.81 +0.5 1,035,676 - SM_b21370 0.81 -0.6 1,035,793 + SM_b21370 0.85 -0.1 1,035,793 + SM_b21370 0.85 +0.7 1,035,793 + SM_b21370 0.85 -0.5 1,035,793 + SM_b21370 0.85 -1.0 1,035,794 - SM_b21370 0.85 +0.7 1,035,794 - SM_b21370 0.85 +0.2 1,035,794 - SM_b21370 0.85 +0.0 1,035,946 - +0.3 1,035,960 + +0.0 1,036,080 + +0.2 1,036,080 + -0.2 1,036,081 - -0.6 1,036,081 - -0.1 1,036,081 - -0.6 1,036,092 + -2.0 1,036,092 + -0.3 1,036,092 + +0.3 1,036,098 + -0.3 1,036,098 + -0.7 1,036,099 - -0.7 1,036,264 + SM_b21371 0.25 -0.1 1,036,264 + SM_b21371 0.25 -0.1 1,036,265 - SM_b21371 0.25 +0.4 1,036,265 - SM_b21371 0.25 -0.8 1,036,265 - SM_b21371 0.25 -0.4 1,036,266 + SM_b21371 0.26 -0.4 1,036,267 - SM_b21371 0.26 +0.1 1,036,679 + SM_b21372 0.13 +1.2 1,036,680 - SM_b21372 0.13 -0.4 1,036,680 - SM_b21372 0.13 +1.1 1,036,680 - SM_b21372 0.13 +1.2 1,036,716 - SM_b21372 0.16 +0.1 1,036,925 + SM_b21372 0.36 +1.0 1,036,925 + SM_b21372 0.36 +0.9 1,036,925 + SM_b21372 0.36 +2.1 1,036,925 + SM_b21372 0.36 +2.0 1,036,926 - SM_b21372 0.36 -0.0 1,036,926 - SM_b21372 0.36 +1.8 1,036,926 - SM_b21372 0.36 +1.1 1,036,982 + SM_b21372 0.41 +1.4 1,036,982 + SM_b21372 0.41 +1.8 1,036,982 + SM_b21372 0.41 +0.9 1,036,982 + SM_b21372 0.41 +1.4 1,036,983 - SM_b21372 0.41 +1.4 1,037,033 + SM_b21372 0.46 +2.3 1,037,034 - SM_b21372 0.46 +0.9 1,037,034 - SM_b21372 0.46 +0.7 1,037,034 - SM_b21372 0.46 +0.5 1,037,141 + SM_b21372 0.56 +1.7 1,037,141 + SM_b21372 0.56 +1.2 1,037,141 + SM_b21372 0.56 +0.1 1,037,142 - SM_b21372 0.56 +1.0 1,037,351 + SM_b21372 0.76 -0.0 1,037,351 + SM_b21372 0.76 +0.7 1,037,351 + SM_b21372 0.76 +0.8 1,037,351 + SM_b21372 0.76 +1.1 1,037,351 + SM_b21372 0.76 +1.6 1,037,351 + SM_b21372 0.76 +1.5 1,037,352 - SM_b21372 0.76 +1.5 1,037,352 - SM_b21372 0.76 +1.3 1,037,352 - SM_b21372 0.76 +0.8 1,037,452 + SM_b21372 0.86 +1.4 1,037,453 - SM_b21372 0.86 +0.6 1,037,510 + +1.5 1,037,511 - +1.1 1,037,819 + -0.8 1,037,928 - SM_b21373 0.17 +0.4 1,037,944 - SM_b21373 0.18 +1.4 1,037,945 + SM_b21373 0.18 -0.0 1,037,993 + SM_b21373 0.22 -0.8 1,037,994 - SM_b21373 0.22 -1.2 1,038,278 + +2.3 1,038,279 - SM_b21373 0.44 +0.2 1,038,436 + -0.0 1,038,437 - SM_b21373 0.56 -0.2 1,038,437 - SM_b21373 0.56 -0.9
Or see this region's nucleotide sequence