Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21364 and SM_b21365 overlap by 8 nucleotides SM_b21365 and SM_b21669 overlap by 19 nucleotides SM_b21669 and SM_b21366 are separated by 40 nucleotides SM_b21366 and SM_b21367 overlap by 10 nucleotides
SM_b21364: SM_b21364 - membrane-anchored oxidoreductase, L-sorbosone dehydrogenase, at 1,027,640 to 1,029,193
_b21364
SM_b21365: SM_b21365 - hypothetical protein, at 1,029,186 to 1,029,638
_b21365
SM_b21669: SM_b21669 - hypothetical protein, at 1,029,620 to 1,029,847
_b21669
SM_b21366: SM_b21366 - hypothetical protein, at 1,029,888 to 1,030,469
_b21366
SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584
_b21367
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1028.921 kb on - strand, within SM_b21364 at 1029.187 kb on + strand at 1029.187 kb on + strand at 1029.187 kb on + strand at 1029.188 kb on - strand at 1029.441 kb on + strand, within SM_b21365 at 1029.442 kb on - strand, within SM_b21365 at 1029.554 kb on + strand, within SM_b21365 at 1029.682 kb on + strand, within SM_b21669 at 1029.683 kb on - strand, within SM_b21669 at 1029.683 kb on - strand, within SM_b21669 at 1029.683 kb on - strand, within SM_b21669 at 1029.908 kb on + strand at 1029.908 kb on + strand at 1029.909 kb on - strand at 1029.909 kb on - strand at 1029.909 kb on - strand at 1029.909 kb on - strand at 1029.909 kb on - strand at 1029.920 kb on + strand at 1029.921 kb on - strand at 1030.218 kb on + strand, within SM_b21366 at 1030.218 kb on + strand, within SM_b21366 at 1030.218 kb on + strand, within SM_b21366 at 1030.218 kb on + strand, within SM_b21366 at 1030.219 kb on - strand, within SM_b21366 at 1030.219 kb on - strand, within SM_b21366 at 1030.219 kb on - strand, within SM_b21366 at 1030.219 kb on - strand, within SM_b21366 at 1030.346 kb on + strand, within SM_b21366 at 1030.347 kb on - strand, within SM_b21366 at 1030.374 kb on + strand, within SM_b21366 at 1030.374 kb on + strand, within SM_b21366 at 1030.375 kb on - strand, within SM_b21366 at 1030.562 kb on + strand at 1030.563 kb on - strand at 1030.563 kb on - strand at 1030.597 kb on + strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.755 kb on + strand, within SM_b21367 at 1030.756 kb on - strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.996 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.139 kb on - strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.226 kb on - strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.421 kb on + strand, within SM_b21367 at 1031.422 kb on - strand, within SM_b21367 at 1031.460 kb on - strand, within SM_b21367
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,028,921 - SM_b21364 0.82 +0.4 1,029,187 + +0.6 1,029,187 + -0.8 1,029,187 + +0.7 1,029,188 - -0.9 1,029,441 + SM_b21365 0.56 -1.1 1,029,442 - SM_b21365 0.57 -0.5 1,029,554 + SM_b21365 0.81 -0.4 1,029,682 + SM_b21669 0.27 -1.0 1,029,683 - SM_b21669 0.28 -0.4 1,029,683 - SM_b21669 0.28 -0.3 1,029,683 - SM_b21669 0.28 +1.7 1,029,908 + +0.3 1,029,908 + -0.0 1,029,909 - -0.1 1,029,909 - +0.0 1,029,909 - -2.1 1,029,909 - -0.6 1,029,909 - -0.8 1,029,920 + -0.4 1,029,921 - +2.0 1,030,218 + SM_b21366 0.57 -0.8 1,030,218 + SM_b21366 0.57 +1.5 1,030,218 + SM_b21366 0.57 -0.6 1,030,218 + SM_b21366 0.57 -0.2 1,030,219 - SM_b21366 0.57 +2.2 1,030,219 - SM_b21366 0.57 +0.4 1,030,219 - SM_b21366 0.57 -0.3 1,030,219 - SM_b21366 0.57 +0.3 1,030,346 + SM_b21366 0.79 +1.2 1,030,347 - SM_b21366 0.79 +0.2 1,030,374 + SM_b21366 0.84 -0.1 1,030,374 + SM_b21366 0.84 +1.0 1,030,375 - SM_b21366 0.84 -0.1 1,030,562 + -0.3 1,030,563 - -0.3 1,030,563 - +0.4 1,030,597 + SM_b21367 0.12 +0.2 1,030,726 - SM_b21367 0.24 -0.8 1,030,726 - SM_b21367 0.24 +0.2 1,030,755 + SM_b21367 0.26 -0.6 1,030,756 - SM_b21367 0.26 +0.1 1,030,862 + SM_b21367 0.36 -0.6 1,030,862 + SM_b21367 0.36 +0.0 1,030,862 + SM_b21367 0.36 +0.2 1,030,862 + SM_b21367 0.36 +0.4 1,030,889 - SM_b21367 0.38 +0.3 1,030,889 - SM_b21367 0.38 -2.4 1,030,996 + SM_b21367 0.48 +0.0 1,031,114 + SM_b21367 0.58 +0.1 1,031,114 + SM_b21367 0.58 +0.1 1,031,115 - SM_b21367 0.58 -0.7 1,031,115 - SM_b21367 0.58 +0.3 1,031,138 + SM_b21367 0.60 -0.3 1,031,138 + SM_b21367 0.60 +1.5 1,031,139 - SM_b21367 0.60 +0.1 1,031,225 + SM_b21367 0.68 +0.2 1,031,225 + SM_b21367 0.68 +0.6 1,031,226 - SM_b21367 0.68 -0.4 1,031,409 + SM_b21367 0.84 -1.0 1,031,409 + SM_b21367 0.84 -0.3 1,031,409 + SM_b21367 0.84 +1.0 1,031,409 + SM_b21367 0.84 -2.7 1,031,409 + SM_b21367 0.84 +0.1 1,031,409 + SM_b21367 0.84 -0.6 1,031,410 - SM_b21367 0.84 -0.5 1,031,410 - SM_b21367 0.84 -0.6 1,031,421 + SM_b21367 0.85 -0.1 1,031,422 - SM_b21367 0.86 +0.3 1,031,460 - SM_b21367 0.89 +0.7
Or see this region's nucleotide sequence