Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21351 and SM_b21352 are separated by 4 nucleotides SM_b21352 and SM_b21353 are separated by 154 nucleotides
SM_b21351: SM_b21351 - C4-dicarboxylate large membrane transport protein, at 1,016,547 to 1,017,830
_b21351
SM_b21352: SM_b21352 - C4-dicarboxylate small membrane transport protein, at 1,017,835 to 1,018,332
_b21352
SM_b21353: SM_b21353 - periplasmic C4-dicarboxylate transport protein, at 1,018,487 to 1,019,464
_b21353
Position (kb)
1017
1018
1019 Strain fitness (log2 ratio)
-1
0
1
2 at 1016.878 kb on - strand, within SM_b21351 at 1016.878 kb on - strand, within SM_b21351 at 1016.883 kb on + strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1016.884 kb on - strand, within SM_b21351 at 1017.088 kb on + strand, within SM_b21351 at 1017.088 kb on + strand, within SM_b21351 at 1017.089 kb on - strand, within SM_b21351 at 1017.138 kb on + strand, within SM_b21351 at 1017.138 kb on + strand, within SM_b21351 at 1017.194 kb on - strand, within SM_b21351 at 1017.194 kb on - strand, within SM_b21351 at 1017.259 kb on + strand, within SM_b21351 at 1017.286 kb on + strand, within SM_b21351 at 1017.359 kb on - strand, within SM_b21351 at 1017.359 kb on - strand, within SM_b21351 at 1017.443 kb on - strand, within SM_b21351 at 1017.480 kb on + strand, within SM_b21351 at 1017.481 kb on - strand, within SM_b21351 at 1017.643 kb on + strand, within SM_b21351 at 1017.643 kb on + strand, within SM_b21351 at 1017.644 kb on - strand, within SM_b21351 at 1017.731 kb on - strand at 1017.845 kb on - strand at 1017.845 kb on - strand at 1017.989 kb on + strand, within SM_b21352 at 1017.989 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.172 kb on + strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.448 kb on + strand at 1018.503 kb on - strand at 1018.551 kb on + strand at 1018.754 kb on + strand, within SM_b21353 at 1018.754 kb on + strand, within SM_b21353 at 1018.755 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353 at 1018.878 kb on + strand, within SM_b21353 at 1018.879 kb on - strand, within SM_b21353 at 1018.879 kb on - strand, within SM_b21353 at 1018.991 kb on - strand, within SM_b21353 at 1019.013 kb on + strand, within SM_b21353 at 1019.014 kb on - strand, within SM_b21353 at 1019.014 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.274 kb on + strand, within SM_b21353
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,016,878 - SM_b21351 0.26 +0.4 1,016,878 - SM_b21351 0.26 -0.0 1,016,883 + SM_b21351 0.26 -0.3 1,016,884 - SM_b21351 0.26 +0.4 1,016,884 - SM_b21351 0.26 +0.6 1,016,884 - SM_b21351 0.26 -1.1 1,017,088 + SM_b21351 0.42 +0.2 1,017,088 + SM_b21351 0.42 +0.6 1,017,089 - SM_b21351 0.42 +0.9 1,017,138 + SM_b21351 0.46 +0.4 1,017,138 + SM_b21351 0.46 +0.6 1,017,194 - SM_b21351 0.50 +0.3 1,017,194 - SM_b21351 0.50 +0.4 1,017,259 + SM_b21351 0.55 -0.1 1,017,286 + SM_b21351 0.58 +0.4 1,017,359 - SM_b21351 0.63 -0.8 1,017,359 - SM_b21351 0.63 +0.7 1,017,443 - SM_b21351 0.70 -1.4 1,017,480 + SM_b21351 0.73 -0.1 1,017,481 - SM_b21351 0.73 -0.6 1,017,643 + SM_b21351 0.85 +0.1 1,017,643 + SM_b21351 0.85 +0.0 1,017,644 - SM_b21351 0.85 -0.7 1,017,731 - -0.0 1,017,845 - +0.1 1,017,845 - -0.4 1,017,989 + SM_b21352 0.31 -1.2 1,017,989 + SM_b21352 0.31 +2.3 1,018,145 + SM_b21352 0.62 -0.2 1,018,145 + SM_b21352 0.62 +2.0 1,018,146 - SM_b21352 0.62 +0.2 1,018,146 - SM_b21352 0.62 +1.4 1,018,146 - SM_b21352 0.62 -0.1 1,018,146 - SM_b21352 0.62 -0.3 1,018,172 + SM_b21352 0.68 -0.0 1,018,173 - SM_b21352 0.68 +1.2 1,018,173 - SM_b21352 0.68 -0.2 1,018,448 + -0.0 1,018,503 - -0.4 1,018,551 + -0.2 1,018,754 + SM_b21353 0.27 -1.7 1,018,754 + SM_b21353 0.27 +0.7 1,018,755 - SM_b21353 0.27 -0.7 1,018,789 - SM_b21353 0.31 -0.2 1,018,789 - SM_b21353 0.31 +0.6 1,018,789 - SM_b21353 0.31 +0.9 1,018,799 + SM_b21353 0.32 +0.0 1,018,799 + SM_b21353 0.32 +1.2 1,018,825 - SM_b21353 0.35 +0.1 1,018,825 - SM_b21353 0.35 +0.7 1,018,878 + SM_b21353 0.40 +0.1 1,018,879 - SM_b21353 0.40 -0.1 1,018,879 - SM_b21353 0.40 +0.1 1,018,991 - SM_b21353 0.52 +0.3 1,019,013 + SM_b21353 0.54 +0.4 1,019,014 - SM_b21353 0.54 +0.0 1,019,014 - SM_b21353 0.54 -0.2 1,019,038 - SM_b21353 0.56 +1.1 1,019,038 - SM_b21353 0.56 +1.0 1,019,038 - SM_b21353 0.56 -0.8 1,019,038 - SM_b21353 0.56 +0.4 1,019,038 - SM_b21353 0.56 +0.2 1,019,274 + SM_b21353 0.80 -0.6
Or see this region's nucleotide sequence