Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21347 and SM_b21348 are separated by 9 nucleotides SM_b21348 and SM_b21349 overlap by 4 nucleotides SM_b21349 and SM_b21350 are separated by 132 nucleotides SM_b21350 and SM_b21351 are separated by 8 nucleotides
SM_b21347: SM_b21347 - pectin degradation protein, at 1,013,699 to 1,014,037
_b21347
SM_b21348: SM_b21348 - 2-deoxy-D-gluconate 3-dehydrogenase, at 1,014,047 to 1,014,811
_b21348
SM_b21349: SM_b21349 - 5-keto-4-deoxyuronate isomerase, at 1,014,808 to 1,015,656
_b21349
SM_b21350: SM_b21350 - GntR family transcriptional regulator, at 1,015,789 to 1,016,538
_b21350
SM_b21351: SM_b21351 - C4-dicarboxylate large membrane transport protein, at 1,016,547 to 1,017,830
_b21351
Position (kb)
1014
1015
1016 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1013.865 kb on + strand, within SM_b21347 at 1013.866 kb on - strand, within SM_b21347 at 1014.096 kb on + strand at 1014.097 kb on - strand at 1014.097 kb on - strand at 1014.097 kb on - strand at 1014.172 kb on + strand, within SM_b21348 at 1014.173 kb on - strand, within SM_b21348 at 1014.336 kb on + strand, within SM_b21348 at 1014.337 kb on - strand, within SM_b21348 at 1014.337 kb on - strand, within SM_b21348 at 1014.689 kb on + strand, within SM_b21348 at 1014.733 kb on + strand, within SM_b21348 at 1014.847 kb on - strand at 1014.847 kb on - strand at 1014.848 kb on + strand at 1014.849 kb on - strand at 1014.855 kb on + strand at 1014.856 kb on - strand at 1014.887 kb on + strand at 1014.887 kb on + strand at 1014.887 kb on + strand at 1014.888 kb on - strand at 1014.955 kb on + strand, within SM_b21349 at 1014.955 kb on + strand, within SM_b21349 at 1014.956 kb on - strand, within SM_b21349 at 1014.956 kb on - strand, within SM_b21349 at 1015.025 kb on + strand, within SM_b21349 at 1015.031 kb on + strand, within SM_b21349 at 1015.031 kb on + strand, within SM_b21349 at 1015.032 kb on - strand, within SM_b21349 at 1015.032 kb on - strand, within SM_b21349 at 1015.222 kb on - strand, within SM_b21349 at 1015.265 kb on + strand, within SM_b21349 at 1015.328 kb on + strand, within SM_b21349 at 1015.329 kb on - strand, within SM_b21349 at 1015.437 kb on + strand, within SM_b21349 at 1015.518 kb on + strand, within SM_b21349 at 1015.520 kb on + strand, within SM_b21349 at 1015.520 kb on + strand, within SM_b21349 at 1015.520 kb on + strand, within SM_b21349 at 1015.521 kb on - strand, within SM_b21349 at 1015.634 kb on + strand at 1015.696 kb on + strand at 1015.696 kb on + strand at 1015.697 kb on - strand at 1015.697 kb on - strand at 1015.700 kb on + strand at 1015.701 kb on - strand at 1015.701 kb on - strand at 1015.724 kb on + strand at 1015.725 kb on - strand at 1015.759 kb on - strand at 1016.051 kb on + strand, within SM_b21350 at 1016.052 kb on - strand, within SM_b21350 at 1016.052 kb on - strand, within SM_b21350 at 1016.054 kb on + strand, within SM_b21350 at 1016.181 kb on + strand, within SM_b21350 at 1016.455 kb on + strand, within SM_b21350 at 1016.455 kb on + strand, within SM_b21350 at 1016.456 kb on - strand, within SM_b21350 at 1016.575 kb on - strand at 1016.593 kb on + strand at 1016.594 kb on - strand at 1016.594 kb on - strand at 1016.594 kb on - strand at 1016.640 kb on + strand at 1016.640 kb on + strand at 1016.641 kb on - strand at 1016.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,013,865 + SM_b21347 0.49 -0.4 1,013,866 - SM_b21347 0.49 -0.4 1,014,096 + -2.1 1,014,097 - +1.3 1,014,097 - +1.2 1,014,097 - -0.1 1,014,172 + SM_b21348 0.16 -1.0 1,014,173 - SM_b21348 0.16 -0.8 1,014,336 + SM_b21348 0.38 +0.9 1,014,337 - SM_b21348 0.38 +0.6 1,014,337 - SM_b21348 0.38 -0.2 1,014,689 + SM_b21348 0.84 +0.6 1,014,733 + SM_b21348 0.90 -0.2 1,014,847 - -0.4 1,014,847 - +0.4 1,014,848 + +0.9 1,014,849 - +0.2 1,014,855 + +1.4 1,014,856 - +0.4 1,014,887 + -0.2 1,014,887 + +0.3 1,014,887 + +0.0 1,014,888 - -0.1 1,014,955 + SM_b21349 0.17 +2.3 1,014,955 + SM_b21349 0.17 -0.4 1,014,956 - SM_b21349 0.17 +0.2 1,014,956 - SM_b21349 0.17 -0.6 1,015,025 + SM_b21349 0.26 -1.2 1,015,031 + SM_b21349 0.26 -0.7 1,015,031 + SM_b21349 0.26 -0.3 1,015,032 - SM_b21349 0.26 +0.0 1,015,032 - SM_b21349 0.26 +0.3 1,015,222 - SM_b21349 0.49 -0.4 1,015,265 + SM_b21349 0.54 -0.9 1,015,328 + SM_b21349 0.61 +2.1 1,015,329 - SM_b21349 0.61 +1.1 1,015,437 + SM_b21349 0.74 +0.1 1,015,518 + SM_b21349 0.84 -0.2 1,015,520 + SM_b21349 0.84 -0.3 1,015,520 + SM_b21349 0.84 +0.9 1,015,520 + SM_b21349 0.84 -0.1 1,015,521 - SM_b21349 0.84 +0.4 1,015,634 + -1.0 1,015,696 + -0.2 1,015,696 + -1.2 1,015,697 - +1.0 1,015,697 - +0.4 1,015,700 + +0.5 1,015,701 - -1.0 1,015,701 - +1.4 1,015,724 + +0.5 1,015,725 - +0.2 1,015,759 - -0.4 1,016,051 + SM_b21350 0.35 +0.1 1,016,052 - SM_b21350 0.35 +1.2 1,016,052 - SM_b21350 0.35 -0.3 1,016,054 + SM_b21350 0.35 -0.1 1,016,181 + SM_b21350 0.52 -0.1 1,016,455 + SM_b21350 0.89 +0.6 1,016,455 + SM_b21350 0.89 -0.2 1,016,456 - SM_b21350 0.89 -0.4 1,016,575 - -0.9 1,016,593 + -0.1 1,016,594 - +0.2 1,016,594 - +0.9 1,016,594 - +0.7 1,016,640 + -0.6 1,016,640 + +1.4 1,016,641 - +0.1 1,016,641 - +0.5
Or see this region's nucleotide sequence