Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21267 and SM_b21268 are separated by 151 nucleotides SM_b21268 and SM_b21269 overlap by 53 nucleotides SM_b21269 and SM_b21270 are separated by 96 nucleotides SM_b21270 and SM_b21271 are separated by 83 nucleotides
SM_b21267: SM_b21267 - hypothetical protein, at 840,855 to 841,532
_b21267
SM_b21268: SM_b21268 - hypothetical protein, at 841,684 to 842,397
_b21268
SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435
_b21269
SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996
_b21270
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
Position (kb) 842
843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 841.459 kb on + strand, within SM_b21267 at 841.459 kb on + strand, within SM_b21267 at 841.460 kb on - strand at 841.526 kb on + strand at 841.526 kb on + strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.527 kb on - strand at 841.538 kb on + strand at 841.538 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.545 kb on + strand at 841.546 kb on - strand at 841.663 kb on + strand at 841.704 kb on + strand at 841.704 kb on + strand at 841.705 kb on - strand at 841.705 kb on - strand at 841.744 kb on + strand at 841.744 kb on + strand at 841.782 kb on - strand, within SM_b21268 at 841.813 kb on + strand, within SM_b21268 at 841.814 kb on - strand, within SM_b21268 at 842.041 kb on + strand, within SM_b21268 at 842.042 kb on - strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.043 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.049 kb on + strand, within SM_b21268 at 842.050 kb on - strand, within SM_b21268 at 842.050 kb on - strand, within SM_b21268 at 842.053 kb on + strand, within SM_b21268 at 842.054 kb on - strand, within SM_b21268 at 842.054 kb on - strand, within SM_b21268 at 842.336 kb on - strand at 842.455 kb on + strand at 842.456 kb on - strand at 842.456 kb on - strand at 842.517 kb on - strand at 842.525 kb on + strand at 842.526 kb on - strand at 842.591 kb on + strand, within SM_b21269 at 842.592 kb on - strand, within SM_b21269 at 842.607 kb on - strand, within SM_b21269 at 842.663 kb on + strand, within SM_b21269 at 842.732 kb on - strand at 842.732 kb on - strand, within SM_b21269 at 842.735 kb on + strand, within SM_b21269 at 843.010 kb on - strand, within SM_b21269 at 843.022 kb on + strand, within SM_b21269 at 843.024 kb on + strand, within SM_b21269 at 843.024 kb on + strand, within SM_b21269 at 843.025 kb on - strand, within SM_b21269 at 843.025 kb on - strand, within SM_b21269 at 843.060 kb on + strand, within SM_b21269 at 843.061 kb on - strand, within SM_b21269 at 843.065 kb on + strand, within SM_b21269 at 843.251 kb on + strand, within SM_b21269 at 843.482 kb on + strand, within SM_b21269 at 843.482 kb on + strand, within SM_b21269 at 843.483 kb on - strand, within SM_b21269 at 843.483 kb on - strand, within SM_b21269 at 843.588 kb on + strand, within SM_b21269 at 843.617 kb on + strand, within SM_b21269 at 843.754 kb on - strand, within SM_b21269 at 843.754 kb on - strand, within SM_b21269 at 843.822 kb on - strand, within SM_b21269 at 843.942 kb on - strand, within SM_b21269 at 843.942 kb on - strand, within SM_b21269 at 843.957 kb on - strand, within SM_b21269 at 843.957 kb on - strand, within SM_b21269 at 843.957 kb on - strand, within SM_b21269 at 844.076 kb on + strand, within SM_b21269 at 844.078 kb on + strand, within SM_b21269 at 844.079 kb on - strand, within SM_b21269 at 844.196 kb on + strand, within SM_b21269 at 844.299 kb on + strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.441 kb on + strand at 844.441 kb on + strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.532 kb on - strand at 844.539 kb on + strand at 844.638 kb on - strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.689 kb on - strand, within SM_b21270 at 845.068 kb on + strand at 845.069 kb on - strand at 845.096 kb on - strand at 845.096 kb on - strand at 845.113 kb on + strand at 845.224 kb on + strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.227 kb on - strand, within SM_b21271
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 841,459 + SM_b21267 0.89 -0.1 841,459 + SM_b21267 0.89 +0.7 841,460 - -0.1 841,526 + +0.3 841,526 + +0.5 841,527 - -0.1 841,527 - -1.0 841,527 - +0.7 841,527 - -1.2 841,538 + -0.6 841,538 + -0.4 841,545 + +0.0 841,545 + -0.4 841,545 + +4.2 841,546 - -0.3 841,663 + -0.5 841,704 + -1.0 841,704 + +0.1 841,705 - -0.2 841,705 - +0.3 841,744 + -0.1 841,744 + +0.8 841,782 - SM_b21268 0.14 +1.1 841,813 + SM_b21268 0.18 +0.1 841,814 - SM_b21268 0.18 +0.9 842,041 + SM_b21268 0.50 +0.1 842,042 - SM_b21268 0.50 -2.8 842,043 + SM_b21268 0.50 +0.9 842,043 + SM_b21268 0.50 +0.1 842,043 + SM_b21268 0.50 +0.1 842,049 + SM_b21268 0.51 -0.5 842,049 + SM_b21268 0.51 +1.4 842,049 + SM_b21268 0.51 +0.6 842,050 - SM_b21268 0.51 +0.6 842,050 - SM_b21268 0.51 +1.2 842,053 + SM_b21268 0.52 -0.1 842,054 - SM_b21268 0.52 -0.8 842,054 - SM_b21268 0.52 +0.8 842,336 - +0.4 842,455 + +0.1 842,456 - +1.9 842,456 - +0.4 842,517 - -0.4 842,525 + +0.8 842,526 - +0.9 842,591 + SM_b21269 0.12 +1.3 842,592 - SM_b21269 0.12 +1.1 842,607 - SM_b21269 0.13 -0.3 842,663 + SM_b21269 0.15 +1.2 842,732 - +0.6 842,732 - SM_b21269 0.19 +0.7 842,735 + SM_b21269 0.19 +0.8 843,010 - SM_b21269 0.32 +0.8 843,022 + SM_b21269 0.32 +2.8 843,024 + SM_b21269 0.32 +1.2 843,024 + SM_b21269 0.32 -1.3 843,025 - SM_b21269 0.33 -0.0 843,025 - SM_b21269 0.33 +0.7 843,060 + SM_b21269 0.34 +0.6 843,061 - SM_b21269 0.34 +0.8 843,065 + SM_b21269 0.34 +0.3 843,251 + SM_b21269 0.43 +1.0 843,482 + SM_b21269 0.54 +0.1 843,482 + SM_b21269 0.54 +1.6 843,483 - SM_b21269 0.54 -0.9 843,483 - SM_b21269 0.54 -0.6 843,588 + SM_b21269 0.59 +1.2 843,617 + SM_b21269 0.61 +1.6 843,754 - SM_b21269 0.67 -0.9 843,754 - SM_b21269 0.67 +1.0 843,822 - SM_b21269 0.71 +0.6 843,942 - SM_b21269 0.76 +2.1 843,942 - SM_b21269 0.76 +0.7 843,957 - SM_b21269 0.77 +1.1 843,957 - SM_b21269 0.77 +1.0 843,957 - SM_b21269 0.77 +1.6 844,076 + SM_b21269 0.83 +0.7 844,078 + SM_b21269 0.83 +0.6 844,079 - SM_b21269 0.83 +0.5 844,196 + SM_b21269 0.89 +0.4 844,299 + +1.5 844,416 - +0.0 844,416 - -1.1 844,416 - +1.2 844,438 + -0.4 844,438 + +0.6 844,438 + -0.5 844,438 + +0.5 844,439 - -0.6 844,439 - -0.5 844,439 - -1.4 844,439 - -0.0 844,439 - +0.4 844,441 + +0.4 844,441 + -0.6 844,442 - +0.1 844,442 - -0.7 844,442 - -0.3 844,463 + +0.4 844,463 + +0.1 844,463 + -0.0 844,464 - -0.4 844,464 - -0.6 844,464 - -0.5 844,532 - +0.0 844,539 + +0.9 844,638 - SM_b21270 0.23 -0.6 844,688 + SM_b21270 0.34 +3.5 844,688 + SM_b21270 0.34 -0.2 844,689 - SM_b21270 0.34 +0.8 845,068 + -0.2 845,069 - +0.6 845,096 - +0.8 845,096 - +0.1 845,113 + -0.7 845,224 + SM_b21271 0.19 -0.4 845,225 - SM_b21271 0.19 +0.5 845,225 - SM_b21271 0.19 -0.0 845,227 - SM_b21271 0.20 +0.4
Or see this region's nucleotide sequence