Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21207 and SM_b21208 overlap by 4 nucleotides SM_b21208 and SM_b21209 are separated by 95 nucleotides
SM_b21207: SM_b21207 - hypothetical protein, at 959,968 to 960,972
_b21207
SM_b21208: SM_b21208 - TetR family transcriptional regulator, at 960,969 to 961,691
_b21208
SM_b21209: SM_b21209 - two-component sensor histidine kinase, at 961,787 to 963,139
_b21209
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.149 kb on + strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.150 kb on - strand, within SM_b21207 at 960.153 kb on + strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.154 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.231 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.270 kb on - strand, within SM_b21207 at 960.276 kb on + strand, within SM_b21207 at 960.424 kb on + strand, within SM_b21207 at 960.425 kb on - strand, within SM_b21207 at 960.543 kb on + strand, within SM_b21207 at 960.544 kb on - strand, within SM_b21207 at 960.604 kb on + strand, within SM_b21207 at 960.605 kb on - strand, within SM_b21207 at 961.078 kb on + strand, within SM_b21208 at 961.079 kb on - strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.223 kb on + strand, within SM_b21208 at 961.224 kb on - strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.228 kb on + strand, within SM_b21208 at 961.229 kb on - strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.477 kb on + strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.478 kb on - strand, within SM_b21208 at 961.681 kb on + strand at 961.811 kb on - strand at 961.927 kb on - strand, within SM_b21209 at 962.018 kb on + strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.019 kb on - strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.038 kb on + strand, within SM_b21209 at 962.124 kb on - strand, within SM_b21209 at 962.269 kb on + strand, within SM_b21209 at 962.650 kb on - strand, within SM_b21209 at 962.654 kb on - strand, within SM_b21209 at 962.655 kb on + strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209 at 962.656 kb on - strand, within SM_b21209
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 960,149 + SM_b21207 0.18 -0.6 960,149 + SM_b21207 0.18 +1.9 960,149 + SM_b21207 0.18 -0.1 960,150 - SM_b21207 0.18 -0.3 960,150 - SM_b21207 0.18 +0.0 960,150 - SM_b21207 0.18 -0.4 960,150 - SM_b21207 0.18 -0.6 960,153 + SM_b21207 0.18 +0.0 960,154 - SM_b21207 0.19 +0.4 960,154 - SM_b21207 0.19 -1.1 960,231 - SM_b21207 0.26 +0.2 960,231 - SM_b21207 0.26 +0.1 960,231 - SM_b21207 0.26 +0.4 960,270 - SM_b21207 0.30 +0.7 960,270 - SM_b21207 0.30 -0.4 960,270 - SM_b21207 0.30 -1.2 960,276 + SM_b21207 0.31 +1.9 960,424 + SM_b21207 0.45 -0.5 960,425 - SM_b21207 0.45 -0.4 960,543 + SM_b21207 0.57 -0.4 960,544 - SM_b21207 0.57 +0.8 960,604 + SM_b21207 0.63 -2.6 960,605 - SM_b21207 0.63 -0.1 961,078 + SM_b21208 0.15 +0.4 961,079 - SM_b21208 0.15 +0.4 961,223 + SM_b21208 0.35 +0.5 961,223 + SM_b21208 0.35 +5.9 961,224 - SM_b21208 0.35 -0.5 961,228 + SM_b21208 0.36 +1.7 961,228 + SM_b21208 0.36 +4.4 961,229 - SM_b21208 0.36 +0.1 961,477 + SM_b21208 0.70 -0.2 961,477 + SM_b21208 0.70 +0.7 961,477 + SM_b21208 0.70 +0.3 961,478 - SM_b21208 0.70 -1.2 961,478 - SM_b21208 0.70 -0.3 961,478 - SM_b21208 0.70 -2.5 961,478 - SM_b21208 0.70 +0.1 961,478 - SM_b21208 0.70 -0.4 961,681 + -1.1 961,811 - +0.9 961,927 - SM_b21209 0.10 +0.5 962,018 + SM_b21209 0.17 -0.2 962,019 - SM_b21209 0.17 +0.6 962,019 - SM_b21209 0.17 -0.0 962,019 - SM_b21209 0.17 -0.2 962,038 + SM_b21209 0.19 -0.6 962,038 + SM_b21209 0.19 +0.3 962,124 - SM_b21209 0.25 +0.2 962,269 + SM_b21209 0.36 -1.1 962,650 - SM_b21209 0.64 -1.0 962,654 - SM_b21209 0.64 +0.1 962,655 + SM_b21209 0.64 -0.1 962,656 - SM_b21209 0.64 -2.5 962,656 - SM_b21209 0.64 +0.1 962,656 - SM_b21209 0.64 +0.5 962,656 - SM_b21209 0.64 +1.2 962,656 - SM_b21209 0.64 -0.7 962,656 - SM_b21209 0.64 +0.5
Or see this region's nucleotide sequence