Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21196 and SM_b21197 are separated by 51 nucleotides SM_b21197 and SM_b21198 overlap by 8 nucleotides
SM_b21196: SM_b21196 - oligopeptide uptake ABC transporter substrate-binding protein precursor, at 945,018 to 946,616
_b21196
SM_b21197: SM_b21197 - oligopeptide uptake ABC transporter permease, at 946,668 to 947,591
_b21197
SM_b21198: SM_b21198 - oligopeptide uptake ABC transporter permease, at 947,584 to 948,714
_b21198
Position (kb) 946
947
948 Strain fitness (log2 ratio) -1
0
1
2 at 945.687 kb on + strand, within SM_b21196 at 945.792 kb on + strand, within SM_b21196 at 945.793 kb on - strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.834 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.873 kb on + strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.874 kb on - strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.876 kb on + strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.877 kb on - strand, within SM_b21196 at 945.879 kb on + strand, within SM_b21196 at 945.880 kb on - strand, within SM_b21196 at 945.907 kb on - strand, within SM_b21196 at 945.907 kb on - strand, within SM_b21196 at 945.908 kb on + strand, within SM_b21196 at 945.909 kb on - strand, within SM_b21196 at 946.002 kb on + strand, within SM_b21196 at 946.029 kb on + strand, within SM_b21196 at 946.029 kb on + strand, within SM_b21196 at 946.030 kb on - strand, within SM_b21196 at 946.264 kb on - strand, within SM_b21196 at 946.264 kb on - strand, within SM_b21196 at 946.269 kb on + strand, within SM_b21196 at 946.269 kb on + strand, within SM_b21196 at 946.367 kb on + strand, within SM_b21196 at 946.368 kb on - strand, within SM_b21196 at 946.368 kb on - strand, within SM_b21196 at 946.381 kb on - strand, within SM_b21196 at 946.428 kb on + strand, within SM_b21196 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.824 kb on + strand, within SM_b21197 at 946.854 kb on + strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.855 kb on - strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.859 kb on + strand, within SM_b21197 at 946.860 kb on - strand, within SM_b21197 at 946.863 kb on + strand at 946.863 kb on + strand, within SM_b21197 at 946.863 kb on + strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.864 kb on - strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.867 kb on + strand, within SM_b21197 at 946.868 kb on - strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.902 kb on + strand, within SM_b21197 at 946.903 kb on - strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.908 kb on + strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 946.985 kb on - strand, within SM_b21197 at 947.302 kb on - strand, within SM_b21197 at 947.370 kb on + strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.371 kb on - strand, within SM_b21197 at 947.432 kb on + strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.433 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.435 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.452 kb on - strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.481 kb on + strand, within SM_b21197 at 947.482 kb on - strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.483 kb on + strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.484 kb on - strand, within SM_b21197 at 947.549 kb on + strand at 947.590 kb on + strand at 947.592 kb on + strand at 947.755 kb on + strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.756 kb on - strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.776 kb on + strand, within SM_b21198 at 947.777 kb on - strand, within SM_b21198 at 947.815 kb on - strand, within SM_b21198 at 948.047 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.168 kb on - strand, within SM_b21198 at 948.190 kb on - strand, within SM_b21198 at 948.207 kb on + strand, within SM_b21198 at 948.239 kb on - strand, within SM_b21198 at 948.375 kb on + strand at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.457 kb on - strand, within SM_b21198 at 948.558 kb on + strand, within SM_b21198
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 945,687 + SM_b21196 0.42 -0.2 945,792 + SM_b21196 0.48 +0.4 945,793 - SM_b21196 0.48 +0.2 945,834 + SM_b21196 0.51 -0.8 945,834 + SM_b21196 0.51 +0.7 945,834 + SM_b21196 0.51 +1.6 945,873 + SM_b21196 0.53 +1.2 945,873 + SM_b21196 0.53 +0.0 945,873 + SM_b21196 0.53 +1.2 945,874 - SM_b21196 0.54 +0.3 945,874 - SM_b21196 0.54 +1.0 945,874 - SM_b21196 0.54 +1.0 945,876 + SM_b21196 0.54 +0.7 945,876 + SM_b21196 0.54 +0.4 945,876 + SM_b21196 0.54 -0.7 945,877 - SM_b21196 0.54 +1.0 945,877 - SM_b21196 0.54 -0.9 945,877 - SM_b21196 0.54 +0.2 945,879 + SM_b21196 0.54 +0.5 945,880 - SM_b21196 0.54 -0.3 945,907 - SM_b21196 0.56 +0.1 945,907 - SM_b21196 0.56 -0.1 945,908 + SM_b21196 0.56 +0.8 945,909 - SM_b21196 0.56 -0.1 946,002 + SM_b21196 0.62 -0.9 946,029 + SM_b21196 0.63 +0.1 946,029 + SM_b21196 0.63 +0.7 946,030 - SM_b21196 0.63 +1.0 946,264 - SM_b21196 0.78 -0.9 946,264 - SM_b21196 0.78 +0.5 946,269 + SM_b21196 0.78 +0.9 946,269 + SM_b21196 0.78 -0.4 946,367 + SM_b21196 0.84 -0.1 946,368 - SM_b21196 0.84 +0.7 946,368 - SM_b21196 0.84 +0.2 946,381 - SM_b21196 0.85 +0.1 946,428 + SM_b21196 0.88 +0.5 946,824 + SM_b21197 0.17 +0.1 946,824 + SM_b21197 0.17 -0.4 946,824 + SM_b21197 0.17 +0.7 946,854 + SM_b21197 0.20 +0.9 946,855 - SM_b21197 0.20 +1.0 946,855 - SM_b21197 0.20 -0.6 946,855 - SM_b21197 0.20 +0.4 946,855 - SM_b21197 0.20 +0.4 946,859 + SM_b21197 0.21 -0.9 946,859 + SM_b21197 0.21 +0.5 946,860 - SM_b21197 0.21 +0.4 946,863 + +0.4 946,863 + SM_b21197 0.21 -0.3 946,863 + SM_b21197 0.21 +0.0 946,864 - SM_b21197 0.21 +0.2 946,864 - SM_b21197 0.21 +0.3 946,864 - SM_b21197 0.21 +1.9 946,864 - SM_b21197 0.21 +0.1 946,864 - SM_b21197 0.21 +0.3 946,864 - SM_b21197 0.21 +0.4 946,867 + SM_b21197 0.22 +0.4 946,867 + SM_b21197 0.22 -0.1 946,867 + SM_b21197 0.22 -0.3 946,868 - SM_b21197 0.22 -0.3 946,902 + SM_b21197 0.25 -0.5 946,902 + SM_b21197 0.25 -0.0 946,902 + SM_b21197 0.25 +0.7 946,903 - SM_b21197 0.25 -1.4 946,908 + SM_b21197 0.26 +0.5 946,908 + SM_b21197 0.26 +0.8 946,908 + SM_b21197 0.26 +0.6 946,985 - SM_b21197 0.34 +0.2 946,985 - SM_b21197 0.34 -0.6 947,302 - SM_b21197 0.69 +1.5 947,370 + SM_b21197 0.76 +0.9 947,371 - SM_b21197 0.76 +0.3 947,371 - SM_b21197 0.76 +0.6 947,432 + SM_b21197 0.83 +1.0 947,433 - SM_b21197 0.83 +0.1 947,433 - SM_b21197 0.83 +1.4 947,435 - SM_b21197 0.83 -1.1 947,435 - SM_b21197 0.83 +0.7 947,452 - SM_b21197 0.85 +1.0 947,452 - SM_b21197 0.85 +1.0 947,481 + SM_b21197 0.88 +0.5 947,481 + SM_b21197 0.88 +1.1 947,482 - SM_b21197 0.88 +0.3 947,483 + SM_b21197 0.88 +0.9 947,483 + SM_b21197 0.88 +0.8 947,483 + SM_b21197 0.88 +0.4 947,483 + SM_b21197 0.88 +0.7 947,484 - SM_b21197 0.88 -1.5 947,484 - SM_b21197 0.88 +0.3 947,484 - SM_b21197 0.88 +0.3 947,484 - SM_b21197 0.88 +0.4 947,549 + -0.4 947,590 + +0.2 947,592 + +0.9 947,755 + SM_b21198 0.15 +0.7 947,756 - SM_b21198 0.15 +0.5 947,756 - SM_b21198 0.15 +0.8 947,776 + SM_b21198 0.17 +1.5 947,776 + SM_b21198 0.17 +1.1 947,777 - SM_b21198 0.17 +0.9 947,815 - SM_b21198 0.20 +0.0 948,047 - SM_b21198 0.41 +0.9 948,168 - SM_b21198 0.52 -0.3 948,168 - SM_b21198 0.52 +0.5 948,168 - SM_b21198 0.52 +0.6 948,190 - SM_b21198 0.54 +1.5 948,207 + SM_b21198 0.55 +1.2 948,239 - SM_b21198 0.58 +1.0 948,375 + -0.4 948,457 - SM_b21198 0.77 +0.4 948,457 - SM_b21198 0.77 +0.8 948,457 - SM_b21198 0.77 +0.6 948,558 + SM_b21198 0.86 +0.2
Or see this region's nucleotide sequence