Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21163 and SM_b21164 are separated by 2 nucleotides SM_b21164 and SM_b21165 are separated by 1 nucleotides SM_b21165 and SM_b21166 overlap by 4 nucleotides
SM_b21163: SM_b21163 - Urocanate hydratase (EC 4.2.1.49) (from data) , at 908,169 to 909,842
_b21163
SM_b21164: SM_b21164 - N-formylglutamate deformylase (EC 3.5.1.68) (from data) , at 909,845 to 910,660
_b21164
SM_b21165: SM_b21165 - Histidine ammonia-lyase (EC 4.3.1.3) (from data) , at 910,662 to 912,197
_b21165
SM_b21166: SM_b21166 - Imidazolonepropionase (EC 3.5.2.7) (from data) , at 912,194 to 913,609
_b21166
Position (kb)
910
911
912
913 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 909.691 kb on + strand at 909.821 kb on + strand at 909.822 kb on - strand at 910.154 kb on - strand, within SM_b21164 at 910.325 kb on + strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.326 kb on - strand, within SM_b21164 at 910.364 kb on - strand, within SM_b21164 at 910.454 kb on + strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.455 kb on - strand, within SM_b21164 at 910.513 kb on - strand, within SM_b21164 at 910.759 kb on + strand at 910.759 kb on + strand at 910.759 kb on + strand at 911.104 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.359 kb on + strand, within SM_b21165 at 911.360 kb on - strand, within SM_b21165 at 911.360 kb on - strand, within SM_b21165 at 911.459 kb on + strand, within SM_b21165 at 911.744 kb on + strand, within SM_b21165 at 911.745 kb on - strand, within SM_b21165 at 911.745 kb on - strand, within SM_b21165 at 911.938 kb on - strand, within SM_b21165 at 912.040 kb on + strand, within SM_b21165 at 912.142 kb on + strand at 912.142 kb on + strand at 912.143 kb on - strand at 912.255 kb on + strand at 912.543 kb on + strand, within SM_b21166 at 912.616 kb on - strand, within SM_b21166 at 912.645 kb on + strand, within SM_b21166 at 912.850 kb on - strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.998 kb on - strand, within SM_b21166 at 913.137 kb on + strand, within SM_b21166 at 913.138 kb on - strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 909,691 + -0.7 909,821 + +0.6 909,822 - +0.4 910,154 - SM_b21164 0.38 +0.1 910,325 + SM_b21164 0.59 -0.4 910,326 - SM_b21164 0.59 +0.3 910,326 - SM_b21164 0.59 +0.7 910,364 - SM_b21164 0.64 +1.0 910,454 + SM_b21164 0.75 -0.0 910,455 - SM_b21164 0.75 +0.9 910,455 - SM_b21164 0.75 +0.7 910,455 - SM_b21164 0.75 +0.3 910,455 - SM_b21164 0.75 +0.2 910,513 - SM_b21164 0.82 -0.4 910,759 + +0.0 910,759 + +0.6 910,759 + -2.9 911,104 + SM_b21165 0.29 +1.0 911,359 + SM_b21165 0.45 +0.9 911,359 + SM_b21165 0.45 +0.1 911,359 + SM_b21165 0.45 +0.2 911,360 - SM_b21165 0.45 +0.7 911,360 - SM_b21165 0.45 -0.0 911,459 + SM_b21165 0.52 +0.0 911,744 + SM_b21165 0.70 -1.3 911,745 - SM_b21165 0.71 -1.0 911,745 - SM_b21165 0.71 +0.5 911,938 - SM_b21165 0.83 -0.1 912,040 + SM_b21165 0.90 -0.8 912,142 + +1.5 912,142 + +0.4 912,143 - -0.5 912,255 + +0.7 912,543 + SM_b21166 0.25 +1.1 912,616 - SM_b21166 0.30 +0.2 912,645 + SM_b21166 0.32 +0.5 912,850 - SM_b21166 0.46 +0.8 912,900 + SM_b21166 0.50 +1.1 912,900 + SM_b21166 0.50 +1.4 912,998 - SM_b21166 0.57 +0.2 913,137 + SM_b21166 0.67 +0.7 913,138 - SM_b21166 0.67 -1.1 913,195 + SM_b21166 0.71 +2.5 913,195 + SM_b21166 0.71 -1.3
Or see this region's nucleotide sequence