Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21145 and SM_b21146 overlap by 4 nucleotides SM_b21146 and SM_b21147 overlap by 1 nucleotides SM_b21147 and SM_b21148 are separated by 188 nucleotides
SM_b21145: SM_b21145 - choline uptake ABC transporter permease, at 889,554 to 890,753
_b21145
SM_b21146: SM_b21146 - choline uptake ABC transporter ATP-binding protein, at 890,750 to 891,688
_b21146
SM_b21147: SM_b21147 - choline uptake ABC transporter permease, at 891,688 to 892,425
_b21147
SM_b21148: SM_b21148 - oxidoreductase, at 892,614 to 893,774
_b21148
Position (kb) 890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 890.080 kb on - strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.376 kb on + strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.377 kb on - strand, within SM_b21145 at 890.681 kb on + strand at 890.770 kb on - strand at 890.780 kb on + strand at 890.780 kb on + strand at 890.830 kb on + strand at 890.929 kb on - strand, within SM_b21146 at 890.929 kb on - strand, within SM_b21146 at 890.984 kb on + strand, within SM_b21146 at 891.143 kb on + strand, within SM_b21146 at 891.216 kb on + strand, within SM_b21146 at 891.217 kb on - strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.398 kb on + strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146 at 891.399 kb on - strand, within SM_b21146 at 891.811 kb on + strand, within SM_b21147 at 891.915 kb on + strand, within SM_b21147 at 892.060 kb on + strand, within SM_b21147 at 892.060 kb on + strand, within SM_b21147 at 892.060 kb on + strand, within SM_b21147 at 892.491 kb on + strand at 892.662 kb on + strand at 892.662 kb on + strand at 892.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 890,080 - SM_b21145 0.44 +1.0 890,376 + SM_b21145 0.69 -0.0 890,376 + SM_b21145 0.69 +1.6 890,377 - SM_b21145 0.69 -0.3 890,377 - SM_b21145 0.69 -0.7 890,681 + +1.1 890,770 - -0.6 890,780 + -0.1 890,780 + -0.4 890,830 + +0.0 890,929 - SM_b21146 0.19 +0.5 890,929 - SM_b21146 0.19 +1.0 890,984 + SM_b21146 0.25 +0.5 891,143 + SM_b21146 0.42 +1.1 891,216 + SM_b21146 0.50 +0.1 891,217 - SM_b21146 0.50 -0.7 891,398 + SM_b21146 0.69 -0.6 891,398 + SM_b21146 0.69 +1.0 891,398 + SM_b21146 0.69 -0.3 891,399 - SM_b21146 0.69 +0.2 891,399 - SM_b21146 0.69 -0.0 891,811 + SM_b21147 0.17 -0.2 891,915 + SM_b21147 0.31 -0.5 892,060 + SM_b21147 0.50 +0.3 892,060 + SM_b21147 0.50 -3.5 892,060 + SM_b21147 0.50 -0.5 892,491 + -1.6 892,662 + -0.4 892,662 + -0.7 892,663 - +0.1
Or see this region's nucleotide sequence