Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21098 and SM_b21099 are separated by 170 nucleotides SM_b21099 and SM_b21100 are separated by 10 nucleotides SM_b21100 and SM_b21101 are separated by 257 nucleotides
SM_b21098: SM_b21098 - hypothetical protein, at 740,599 to 741,396
_b21098
SM_b21099: SM_b21099 - hypothetical protein, at 741,567 to 741,989
_b21099
SM_b21100: SM_b21100 - polysaccharide deacetylase, at 742,000 to 742,878
_b21100
SM_b21101: SM_b21101 - L-fucono-1,5-lactonase; D-arabinolactonase (from data) , at 743,136 to 743,972
_b21101
Position (kb)
741
742
743 Strain fitness (log2 ratio)
-1
0
1
2 at 741.038 kb on - strand, within SM_b21098 at 741.364 kb on + strand at 741.365 kb on - strand at 741.417 kb on + strand at 741.417 kb on + strand at 741.417 kb on + strand at 741.418 kb on - strand at 741.642 kb on + strand, within SM_b21099 at 741.643 kb on - strand, within SM_b21099 at 741.643 kb on - strand, within SM_b21099 at 741.643 kb on - strand, within SM_b21099 at 741.706 kb on + strand, within SM_b21099 at 741.714 kb on - strand, within SM_b21099 at 741.714 kb on - strand, within SM_b21099 at 741.714 kb on - strand, within SM_b21099 at 742.006 kb on + strand at 742.006 kb on + strand at 742.007 kb on - strand at 742.007 kb on - strand at 742.178 kb on - strand, within SM_b21100 at 742.291 kb on - strand, within SM_b21100 at 742.478 kb on - strand, within SM_b21100 at 742.478 kb on - strand, within SM_b21100 at 742.887 kb on - strand at 742.915 kb on + strand at 742.945 kb on + strand at 742.946 kb on - strand at 742.976 kb on + strand at 742.976 kb on + strand at 742.976 kb on + strand at 742.977 kb on - strand at 743.061 kb on + strand at 743.061 kb on + strand at 743.061 kb on + strand at 743.134 kb on + strand at 743.134 kb on + strand at 743.135 kb on - strand at 743.327 kb on - strand, within SM_b21101 at 743.327 kb on - strand, within SM_b21101 at 743.366 kb on - strand, within SM_b21101 at 743.423 kb on + strand, within SM_b21101 at 743.424 kb on - strand, within SM_b21101 at 743.457 kb on + strand, within SM_b21101 at 743.457 kb on + strand, within SM_b21101 at 743.458 kb on - strand, within SM_b21101 at 743.458 kb on - strand, within SM_b21101 at 743.522 kb on + strand, within SM_b21101 at 743.522 kb on + strand, within SM_b21101 at 743.693 kb on - strand, within SM_b21101 at 743.826 kb on - strand, within SM_b21101 at 743.869 kb on + strand, within SM_b21101 at 743.878 kb on + strand, within SM_b21101
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 741,038 - SM_b21098 0.55 +0.3 741,364 + +0.5 741,365 - -0.6 741,417 + +0.4 741,417 + -0.9 741,417 + -1.3 741,418 - -0.6 741,642 + SM_b21099 0.18 -0.2 741,643 - SM_b21099 0.18 -0.3 741,643 - SM_b21099 0.18 +1.4 741,643 - SM_b21099 0.18 -0.7 741,706 + SM_b21099 0.33 -0.3 741,714 - SM_b21099 0.35 -0.5 741,714 - SM_b21099 0.35 +0.4 741,714 - SM_b21099 0.35 -0.4 742,006 + +0.4 742,006 + -0.4 742,007 - +0.1 742,007 - +0.2 742,178 - SM_b21100 0.20 +2.4 742,291 - SM_b21100 0.33 +0.8 742,478 - SM_b21100 0.54 +0.2 742,478 - SM_b21100 0.54 +0.1 742,887 - -1.1 742,915 + -0.1 742,945 + +0.6 742,946 - -1.4 742,976 + -0.0 742,976 + -0.6 742,976 + +0.1 742,977 - +0.2 743,061 + -0.5 743,061 + +0.1 743,061 + +0.3 743,134 + -0.1 743,134 + +0.9 743,135 - -0.6 743,327 - SM_b21101 0.23 -0.2 743,327 - SM_b21101 0.23 +0.3 743,366 - SM_b21101 0.27 +0.4 743,423 + SM_b21101 0.34 -0.3 743,424 - SM_b21101 0.34 -0.1 743,457 + SM_b21101 0.38 +0.9 743,457 + SM_b21101 0.38 +0.1 743,458 - SM_b21101 0.38 -0.6 743,458 - SM_b21101 0.38 -1.0 743,522 + SM_b21101 0.46 -0.6 743,522 + SM_b21101 0.46 -0.0 743,693 - SM_b21101 0.67 +0.4 743,826 - SM_b21101 0.82 -1.1 743,869 + SM_b21101 0.88 +0.8 743,878 + SM_b21101 0.89 +1.8
Or see this region's nucleotide sequence