Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21035 and SM_b21036 are separated by 138 nucleotides SM_b21036 and SM_b21037 are separated by 162 nucleotides
SM_b21035: SM_b21035 - hypothetical protein, at 653,580 to 653,798
_b21035
SM_b21036: SM_b21036 - hypothetical protein, at 653,937 to 654,485
_b21036
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
Position (kb) 653
654
655 Strain fitness (log2 ratio) -1
0
1
2 at 652.944 kb on + strand at 652.944 kb on + strand at 652.945 kb on - strand at 652.964 kb on - strand at 653.020 kb on + strand at 653.047 kb on - strand at 653.047 kb on - strand at 653.104 kb on + strand at 653.105 kb on - strand at 653.259 kb on - strand at 653.352 kb on + strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.353 kb on - strand at 653.364 kb on + strand at 653.364 kb on + strand at 653.364 kb on + strand at 653.365 kb on - strand at 653.365 kb on - strand at 653.372 kb on + strand at 653.373 kb on - strand at 653.438 kb on + strand at 653.458 kb on + strand at 653.459 kb on - strand at 653.459 kb on - strand at 653.488 kb on + strand at 653.489 kb on - strand at 653.494 kb on - strand at 653.581 kb on + strand at 653.581 kb on + strand at 653.672 kb on + strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.673 kb on - strand, within SM_b21035 at 653.771 kb on + strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.772 kb on - strand, within SM_b21035 at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.954 kb on + strand at 653.992 kb on - strand, within SM_b21036 at 654.533 kb on + strand at 654.533 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.541 kb on + strand at 654.542 kb on - strand at 654.542 kb on - strand at 654.621 kb on - strand at 654.762 kb on - strand at 654.768 kb on + strand at 654.768 kb on + strand at 654.769 kb on - strand at 654.769 kb on - strand at 654.795 kb on + strand at 654.796 kb on - strand at 654.833 kb on + strand, within SM_b21037 at 654.833 kb on + strand, within SM_b21037 at 654.834 kb on - strand, within SM_b21037 at 654.838 kb on - strand, within SM_b21037 at 654.852 kb on + strand, within SM_b21037 at 655.047 kb on + strand, within SM_b21037 at 655.048 kb on - strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.230 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.319 kb on + strand, within SM_b21037 at 655.320 kb on - strand, within SM_b21037 at 655.475 kb on - strand, within SM_b21037
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 652,944 + -0.4 652,944 + -0.2 652,945 - +0.5 652,964 - -1.0 653,020 + +0.4 653,047 - -0.9 653,047 - -1.4 653,104 + -1.2 653,105 - +0.0 653,259 - -0.2 653,352 + +0.5 653,353 - -0.0 653,353 - -0.3 653,353 - +0.2 653,353 - -0.1 653,353 - -0.4 653,364 + +0.2 653,364 + +0.2 653,364 + -0.5 653,365 - -0.7 653,365 - +0.5 653,372 + +0.2 653,373 - -0.2 653,438 + -1.2 653,458 + -1.4 653,459 - -0.3 653,459 - -0.0 653,488 + +0.5 653,489 - +0.9 653,494 - +0.5 653,581 + -0.7 653,581 + +0.1 653,672 + SM_b21035 0.42 -0.8 653,673 - SM_b21035 0.42 +0.5 653,673 - SM_b21035 0.42 -0.1 653,771 + SM_b21035 0.87 +0.5 653,772 - SM_b21035 0.88 -0.0 653,772 - SM_b21035 0.88 -1.3 653,954 + +1.1 653,954 + -0.4 653,954 + -0.0 653,954 + -0.1 653,992 - SM_b21036 0.10 -0.6 654,533 + -1.2 654,533 + -0.0 654,533 + -1.3 654,534 - +0.0 654,534 - -0.4 654,541 + +0.5 654,542 - -0.6 654,542 - -0.5 654,621 - +0.2 654,762 - -0.1 654,768 + +0.8 654,768 + -0.4 654,769 - -1.5 654,769 - -0.9 654,795 + +0.1 654,796 - +0.2 654,833 + SM_b21037 0.12 +1.8 654,833 + SM_b21037 0.12 -0.3 654,834 - SM_b21037 0.12 -0.6 654,838 - SM_b21037 0.12 -0.7 654,852 + SM_b21037 0.13 -0.8 655,047 + SM_b21037 0.25 +0.6 655,048 - SM_b21037 0.25 -0.6 655,230 + SM_b21037 0.36 +1.4 655,230 + SM_b21037 0.36 +0.5 655,287 + SM_b21037 0.40 +0.0 655,287 + SM_b21037 0.40 -1.0 655,319 + SM_b21037 0.42 +0.8 655,320 - SM_b21037 0.42 +0.8 655,475 - SM_b21037 0.52 -0.2
Or see this region's nucleotide sequence