Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20993 and SM_b20994 are separated by 271 nucleotides SM_b20994 and SM_b20995 are separated by 244 nucleotides
SM_b20993: SM_b20993 - FMNH2-dependent monooxygenase, at 1,228,814 to 1,230,025
_b20993
SM_b20994: SM_b20994 - hypothetical protein, at 1,230,297 to 1,230,830
_b20994
SM_b20995: SM_b20995 - GTP-binding protein EngA, at 1,231,075 to 1,232,505
_b20995
Position (kb)
1230
1231 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.304 kb on - strand, within SM_b20993 at 1229.304 kb on - strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.309 kb on - strand, within SM_b20993 at 1229.530 kb on + strand, within SM_b20993 at 1229.916 kb on - strand at 1229.984 kb on + strand at 1229.984 kb on + strand at 1229.984 kb on + strand at 1229.985 kb on - strand at 1229.985 kb on - strand at 1230.000 kb on + strand at 1230.194 kb on + strand at 1230.195 kb on - strand at 1230.240 kb on - strand at 1230.250 kb on - strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.273 kb on + strand at 1230.274 kb on - strand at 1230.274 kb on - strand at 1230.281 kb on - strand at 1230.463 kb on + strand, within SM_b20994 at 1230.464 kb on - strand, within SM_b20994 at 1230.464 kb on - strand, within SM_b20994 at 1230.730 kb on + strand, within SM_b20994 at 1230.730 kb on + strand, within SM_b20994 at 1230.914 kb on + strand at 1230.927 kb on + strand at 1230.928 kb on - strand at 1230.928 kb on - strand at 1230.939 kb on - strand at 1230.940 kb on + strand at 1230.941 kb on - strand at 1230.983 kb on + strand at 1230.987 kb on + strand at 1230.987 kb on + strand at 1230.999 kb on - strand at 1231.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,229,303 + SM_b20993 0.40 -0.0 1,229,303 + SM_b20993 0.40 -0.2 1,229,303 + SM_b20993 0.40 -1.1 1,229,303 + SM_b20993 0.40 +0.8 1,229,303 + SM_b20993 0.40 -1.1 1,229,304 - SM_b20993 0.40 -0.2 1,229,304 - SM_b20993 0.40 -1.4 1,229,308 + SM_b20993 0.41 -0.8 1,229,308 + SM_b20993 0.41 +0.8 1,229,308 + SM_b20993 0.41 -2.4 1,229,309 - SM_b20993 0.41 -0.2 1,229,530 + SM_b20993 0.59 -0.4 1,229,916 - -1.5 1,229,984 + +0.2 1,229,984 + +1.3 1,229,984 + +0.2 1,229,985 - +0.3 1,229,985 - -0.8 1,230,000 + -0.3 1,230,194 + +0.1 1,230,195 - -0.7 1,230,240 - -0.0 1,230,250 - -0.0 1,230,273 + -0.2 1,230,273 + -0.3 1,230,273 + +0.4 1,230,273 + +0.5 1,230,274 - +0.9 1,230,274 - +0.3 1,230,281 - -0.6 1,230,463 + SM_b20994 0.31 +1.0 1,230,464 - SM_b20994 0.31 +1.0 1,230,464 - SM_b20994 0.31 +0.4 1,230,730 + SM_b20994 0.81 +0.7 1,230,730 + SM_b20994 0.81 +2.2 1,230,914 + +1.4 1,230,927 + +1.3 1,230,928 - +0.1 1,230,928 - -1.6 1,230,939 - -0.1 1,230,940 + +1.0 1,230,941 - +0.1 1,230,983 + +0.8 1,230,987 + +0.5 1,230,987 + +1.2 1,230,999 - +0.9 1,231,012 + +1.0
Or see this region's nucleotide sequence