Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20906 and SM_b20907 overlap by 8 nucleotides SM_b20907 and SM_b20908 are separated by 224 nucleotides SM_b20908 and SM_b21680 are separated by 30 nucleotides SM_b21680 and SM_b21681 are separated by 94 nucleotides SM_b21681 and SM_b20909 are separated by 111 nucleotides SM_b20909 and SM_b20910 are separated by 58 nucleotides
SM_b20906: SM_b20906 - hypothetical protein, at 1,316,960 to 1,317,265
_b20906
SM_b20907: SM_b20907 - hypothetical protein, at 1,317,258 to 1,317,563
_b20907
SM_b20908: SM_b20908 - hypothetical protein, at 1,317,788 to 1,318,126
_b20908
SM_b21680: SM_b21680 - hypothetical protein, at 1,318,157 to 1,318,312
_b21680
SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583
_b21681
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
Position (kb)
1317
1318
1319 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1316.892 kb on + strand at 1317.017 kb on + strand, within SM_b20906 at 1317.117 kb on - strand, within SM_b20906 at 1317.133 kb on + strand, within SM_b20906 at 1317.136 kb on + strand, within SM_b20906 at 1317.186 kb on - strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.209 kb on + strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.210 kb on - strand, within SM_b20906 at 1317.211 kb on + strand, within SM_b20906 at 1317.211 kb on + strand, within SM_b20906 at 1317.212 kb on - strand, within SM_b20906 at 1317.264 kb on - strand at 1317.264 kb on - strand at 1317.280 kb on + strand at 1317.280 kb on + strand at 1317.280 kb on + strand at 1317.281 kb on - strand at 1317.281 kb on - strand at 1317.281 kb on - strand at 1317.287 kb on + strand at 1317.310 kb on + strand, within SM_b20907 at 1317.385 kb on + strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.386 kb on - strand, within SM_b20907 at 1317.452 kb on - strand, within SM_b20907 at 1317.452 kb on - strand, within SM_b20907 at 1317.488 kb on + strand, within SM_b20907 at 1317.518 kb on + strand, within SM_b20907 at 1317.593 kb on + strand at 1317.757 kb on + strand at 1317.758 kb on - strand at 1317.758 kb on - strand at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.980 kb on + strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1317.981 kb on - strand, within SM_b20908 at 1318.002 kb on + strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.003 kb on - strand, within SM_b20908 at 1318.064 kb on + strand, within SM_b20908 at 1318.065 kb on - strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.071 kb on + strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.072 kb on - strand, within SM_b20908 at 1318.145 kb on + strand at 1318.178 kb on - strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.237 kb on + strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.238 kb on - strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.239 kb on + strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.240 kb on - strand, within SM_b21680 at 1318.400 kb on + strand at 1318.453 kb on + strand, within SM_b21681 at 1318.453 kb on + strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.454 kb on - strand, within SM_b21681 at 1318.581 kb on + strand at 1318.718 kb on + strand at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,316,892 + -0.2 1,317,017 + SM_b20906 0.19 +0.7 1,317,117 - SM_b20906 0.51 -0.3 1,317,133 + SM_b20906 0.57 -1.3 1,317,136 + SM_b20906 0.58 -0.1 1,317,186 - SM_b20906 0.74 -2.8 1,317,209 + SM_b20906 0.81 -0.6 1,317,209 + SM_b20906 0.81 +0.9 1,317,209 + SM_b20906 0.81 -0.5 1,317,210 - SM_b20906 0.82 -0.2 1,317,210 - SM_b20906 0.82 +0.3 1,317,210 - SM_b20906 0.82 -0.0 1,317,211 + SM_b20906 0.82 -0.7 1,317,211 + SM_b20906 0.82 -0.7 1,317,212 - SM_b20906 0.82 -0.4 1,317,264 - +0.5 1,317,264 - +1.2 1,317,280 + -0.0 1,317,280 + +3.6 1,317,280 + -0.1 1,317,281 - -0.6 1,317,281 - +0.4 1,317,281 - +0.6 1,317,287 + -0.1 1,317,310 + SM_b20907 0.17 +0.1 1,317,385 + SM_b20907 0.42 +0.2 1,317,386 - SM_b20907 0.42 -0.3 1,317,386 - SM_b20907 0.42 -0.5 1,317,386 - SM_b20907 0.42 +0.9 1,317,386 - SM_b20907 0.42 -0.3 1,317,452 - SM_b20907 0.63 +0.5 1,317,452 - SM_b20907 0.63 +0.2 1,317,488 + SM_b20907 0.75 -0.4 1,317,518 + SM_b20907 0.85 -0.3 1,317,593 + -1.4 1,317,757 + -1.4 1,317,758 - -1.5 1,317,758 - +0.1 1,317,980 + SM_b20908 0.57 -0.3 1,317,980 + SM_b20908 0.57 -0.1 1,317,980 + SM_b20908 0.57 +1.1 1,317,980 + SM_b20908 0.57 -0.6 1,317,981 - SM_b20908 0.57 +0.3 1,317,981 - SM_b20908 0.57 +0.4 1,318,002 + SM_b20908 0.63 +1.6 1,318,003 - SM_b20908 0.63 +1.0 1,318,003 - SM_b20908 0.63 +0.0 1,318,064 + SM_b20908 0.81 +0.0 1,318,065 - SM_b20908 0.82 -0.9 1,318,071 + SM_b20908 0.83 +0.5 1,318,071 + SM_b20908 0.83 +0.2 1,318,071 + SM_b20908 0.83 -0.0 1,318,071 + SM_b20908 0.83 +0.5 1,318,072 - SM_b20908 0.84 +1.5 1,318,072 - SM_b20908 0.84 +0.4 1,318,145 + -0.4 1,318,178 - SM_b21680 0.13 +1.1 1,318,237 + SM_b21680 0.51 -0.4 1,318,237 + SM_b21680 0.51 -0.1 1,318,238 - SM_b21680 0.52 -0.2 1,318,238 - SM_b21680 0.52 +0.7 1,318,238 - SM_b21680 0.52 -1.1 1,318,238 - SM_b21680 0.52 -0.8 1,318,238 - SM_b21680 0.52 -0.7 1,318,239 + SM_b21680 0.53 +0.2 1,318,239 + SM_b21680 0.53 +0.5 1,318,239 + SM_b21680 0.53 +0.6 1,318,239 + SM_b21680 0.53 -0.6 1,318,240 - SM_b21680 0.53 +0.9 1,318,240 - SM_b21680 0.53 +0.4 1,318,240 - SM_b21680 0.53 +0.1 1,318,240 - SM_b21680 0.53 -0.3 1,318,240 - SM_b21680 0.53 -0.6 1,318,400 + +0.4 1,318,453 + SM_b21681 0.26 -0.0 1,318,453 + SM_b21681 0.26 +0.5 1,318,454 - SM_b21681 0.27 -1.9 1,318,454 - SM_b21681 0.27 -0.6 1,318,454 - SM_b21681 0.27 -0.2 1,318,454 - SM_b21681 0.27 -0.7 1,318,454 - SM_b21681 0.27 -2.0 1,318,454 - SM_b21681 0.27 -1.0 1,318,581 + +0.1 1,318,718 + +0.3 1,318,826 + SM_b20909 0.45 +0.5 1,318,827 - SM_b20909 0.45 +0.7 1,318,963 + +0.1 1,318,963 + +0.3 1,318,964 - -0.2 1,319,022 + +0.3 1,319,027 + +0.8 1,319,048 + +1.3
Or see this region's nucleotide sequence