Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20822 and SM_b20823 are separated by 9 nucleotides SM_b20823 and SM_b20824 are separated by 610 nucleotides
SM_b20822: SM_b20822 - cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833, at 611,046 to 611,870
_b20822
SM_b20823: SM_b20823 - cell surface saccharide synthesis protein, at 611,880 to 612,911
_b20823
SM_b20824: SM_b20824 - hypothetical protein, at 613,522 to 615,858
_b20824
Position (kb) 611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.924 kb on + strand at 610.925 kb on - strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.077 kb on + strand at 611.078 kb on - strand at 611.078 kb on - strand at 611.181 kb on + strand, within SM_b20822 at 611.182 kb on - strand, within SM_b20822 at 611.316 kb on + strand, within SM_b20822 at 611.376 kb on + strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.377 kb on - strand, within SM_b20822 at 611.381 kb on + strand, within SM_b20822 at 611.471 kb on + strand, within SM_b20822 at 611.598 kb on + strand, within SM_b20822 at 611.782 kb on - strand, within SM_b20822 at 611.882 kb on - strand at 611.882 kb on - strand at 611.882 kb on - strand at 611.977 kb on + strand at 611.981 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.982 kb on + strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.983 kb on - strand at 611.986 kb on + strand, within SM_b20823 at 611.986 kb on + strand, within SM_b20823 at 612.141 kb on - strand, within SM_b20823 at 612.148 kb on + strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.149 kb on - strand, within SM_b20823 at 612.280 kb on + strand, within SM_b20823 at 612.461 kb on - strand, within SM_b20823 at 612.468 kb on - strand, within SM_b20823 at 612.541 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.549 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.589 kb on + strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.590 kb on - strand, within SM_b20823 at 612.593 kb on + strand, within SM_b20823 at 612.594 kb on - strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.676 kb on + strand, within SM_b20823 at 612.677 kb on - strand, within SM_b20823 at 612.681 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.772 kb on - strand, within SM_b20823 at 612.859 kb on - strand at 612.859 kb on - strand at 612.955 kb on - strand at 613.022 kb on + strand at 613.022 kb on + strand at 613.023 kb on - strand at 613.119 kb on + strand at 613.120 kb on - strand at 613.125 kb on + strand at 613.125 kb on + strand at 613.126 kb on - strand at 613.126 kb on - strand at 613.213 kb on + strand at 613.214 kb on - strand at 613.226 kb on - strand at 613.226 kb on - strand at 613.229 kb on + strand at 613.229 kb on + strand at 613.230 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.242 kb on + strand at 613.323 kb on + strand at 613.338 kb on + strand at 613.338 kb on + strand at 613.357 kb on + strand at 613.371 kb on + strand at 613.429 kb on - strand at 613.429 kb on - strand at 613.448 kb on - strand at 613.532 kb on - strand at 613.532 kb on - strand at 613.569 kb on - strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.632 kb on + strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.633 kb on - strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.689 kb on + strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.690 kb on - strand at 613.703 kb on - strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.730 kb on + strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.731 kb on - strand at 613.768 kb on - strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.813 kb on + strand, within SM_b20824 at 613.814 kb on - strand, within SM_b20824 at 613.823 kb on + strand, within SM_b20824
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 610,924 + -0.6 610,925 - -0.2 611,077 + -0.6 611,077 + -0.7 611,077 + -0.2 611,077 + -1.0 611,077 + +1.8 611,078 - -0.6 611,078 - -0.9 611,181 + SM_b20822 0.16 -1.4 611,182 - SM_b20822 0.16 -1.1 611,316 + SM_b20822 0.33 -0.7 611,376 + SM_b20822 0.40 -0.7 611,377 - SM_b20822 0.40 -0.3 611,377 - SM_b20822 0.40 -0.4 611,381 + SM_b20822 0.41 -2.2 611,471 + SM_b20822 0.52 -1.8 611,598 + SM_b20822 0.67 -0.6 611,782 - SM_b20822 0.89 -0.3 611,882 - +1.0 611,882 - -0.1 611,882 - +0.0 611,977 + -1.9 611,981 + -0.6 611,982 + -1.0 611,982 + -1.2 611,982 + -0.6 611,982 + -0.9 611,982 + -0.7 611,982 + -0.8 611,982 + -3.0 611,982 + -0.8 611,982 + -1.0 611,983 - -1.2 611,983 - -0.5 611,983 - -1.4 611,983 - -2.3 611,983 - -0.6 611,983 - -0.4 611,983 - -1.9 611,983 - -0.5 611,983 - -0.8 611,983 - -0.7 611,986 + SM_b20823 0.10 -1.6 611,986 + SM_b20823 0.10 +0.4 612,141 - SM_b20823 0.25 -0.4 612,148 + SM_b20823 0.26 -0.2 612,149 - SM_b20823 0.26 -1.2 612,149 - SM_b20823 0.26 +0.9 612,149 - SM_b20823 0.26 -3.2 612,149 - SM_b20823 0.26 -0.6 612,280 + SM_b20823 0.39 -0.4 612,461 - SM_b20823 0.56 -1.7 612,468 - SM_b20823 0.57 -0.5 612,541 + SM_b20823 0.64 -1.9 612,549 + SM_b20823 0.65 -0.9 612,549 + SM_b20823 0.65 -0.9 612,549 + SM_b20823 0.65 -0.0 612,549 + SM_b20823 0.65 -1.5 612,549 + SM_b20823 0.65 -0.9 612,589 + SM_b20823 0.69 +2.5 612,589 + SM_b20823 0.69 -0.7 612,590 - SM_b20823 0.69 -0.7 612,590 - SM_b20823 0.69 -0.5 612,593 + SM_b20823 0.69 -1.2 612,594 - SM_b20823 0.69 +0.4 612,676 + SM_b20823 0.77 -1.1 612,676 + SM_b20823 0.77 -0.9 612,676 + SM_b20823 0.77 -0.6 612,677 - SM_b20823 0.77 +0.6 612,681 - SM_b20823 0.78 -1.3 612,772 - SM_b20823 0.86 -0.8 612,772 - SM_b20823 0.86 -0.6 612,859 - -1.3 612,859 - -1.6 612,955 - +0.1 613,022 + +0.4 613,022 + -0.1 613,023 - -0.5 613,119 + -1.2 613,120 - -0.7 613,125 + -0.9 613,125 + +1.4 613,126 - +0.1 613,126 - -0.7 613,213 + +0.5 613,214 - +0.2 613,226 - +0.8 613,226 - -0.1 613,229 + -0.5 613,229 + -0.7 613,230 - +0.2 613,237 + +0.5 613,237 + -0.2 613,242 + -0.4 613,323 + +0.4 613,338 + +0.5 613,338 + -0.9 613,357 + -0.6 613,371 + +0.3 613,429 - +0.3 613,429 - -0.2 613,448 - -0.6 613,532 - -0.9 613,532 - -0.7 613,569 - -2.5 613,632 + -1.0 613,632 + -1.1 613,632 + -0.0 613,633 - +0.2 613,633 - -1.0 613,633 - +0.1 613,689 + -0.1 613,689 + -0.3 613,689 + -0.7 613,689 + -0.1 613,690 - +0.2 613,690 - -0.3 613,690 - -0.2 613,690 - -0.6 613,690 - +0.8 613,690 - -0.2 613,703 - -1.3 613,730 + +0.6 613,730 + -0.0 613,730 + -0.9 613,731 - -0.8 613,731 - +0.5 613,731 - +2.2 613,731 - +0.4 613,768 - SM_b20824 0.11 +0.5 613,813 + SM_b20824 0.12 -1.4 613,813 + SM_b20824 0.12 +0.3 613,813 + SM_b20824 0.12 -0.5 613,814 - SM_b20824 0.12 -0.0 613,823 + SM_b20824 0.13 +0.0
Or see this region's nucleotide sequence