Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20811

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20810 and SM_b20811 are separated by 145 nucleotidesSM_b20811 and SM_b20812 are separated by 65 nucleotides SM_b20810: SM_b20810 - membrane-located cell surface saccharide acetylase, at 595,610 to 597,643 _b20810 SM_b20811: SM_b20811 - hypothetical protein, at 597,789 to 598,109 _b20811 SM_b20812: SM_b20812 - hypothetical protein, at 598,175 to 599,221 _b20812 Position (kb) 597 598 599Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.792 kb on + strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.793 kb on - strand, within SM_b20810at 596.866 kb on - strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.962 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.989 kb on + strand, within SM_b20810at 596.990 kb on - strand, within SM_b20810at 596.991 kb on + strand, within SM_b20810at 596.992 kb on - strand, within SM_b20810at 596.992 kb on - strand, within SM_b20810at 597.144 kb on - strand, within SM_b20810at 597.151 kb on + strand, within SM_b20810at 597.152 kb on - strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.155 kb on + strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.156 kb on - strand, within SM_b20810at 597.187 kb on + strand, within SM_b20810at 597.188 kb on - strand, within SM_b20810at 597.210 kb on + strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.233 kb on - strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.273 kb on + strand, within SM_b20810at 597.274 kb on - strand, within SM_b20810at 597.305 kb on - strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.326 kb on + strand, within SM_b20810at 597.327 kb on - strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.381 kb on + strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.382 kb on - strand, within SM_b20810at 597.399 kb on - strand, within SM_b20810at 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.514 kb on + strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.515 kb on - strandat 597.536 kb on + strandat 597.536 kb on + strandat 597.537 kb on - strandat 597.537 kb on - strandat 597.609 kb on + strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.610 kb on - strandat 597.706 kb on - strandat 597.736 kb on + strandat 597.775 kb on - strandat 597.922 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 597.941 kb on + strand, within SM_b20811at 598.078 kb on + strandat 598.107 kb on + strandat 598.176 kb on + strandat 598.177 kb on - strandat 598.178 kb on + strandat 598.179 kb on - strandat 598.195 kb on + strandat 598.257 kb on - strandat 598.332 kb on + strand, within SM_b20812at 598.333 kb on - strand, within SM_b20812at 598.390 kb on + strand, within SM_b20812at 598.414 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.524 kb on + strand, within SM_b20812at 598.525 kb on - strand, within SM_b20812at 598.552 kb on + strand, within SM_b20812at 598.815 kb on + strand, within SM_b20812at 598.816 kb on - strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.819 kb on + strand, within SM_b20812at 598.820 kb on - strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.823 kb on + strand, within SM_b20812at 598.824 kb on - strand, within SM_b20812at 598.838 kb on + strand, within SM_b20812at 598.856 kb on + strand, within SM_b20812at 598.857 kb on - strand, within SM_b20812at 598.857 kb on - strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.915 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.964 kb on + strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.965 kb on - strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.966 kb on + strand, within SM_b20812at 598.967 kb on - strand, within SM_b20812at 598.990 kb on - strand, within SM_b20812

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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596,792 + SM_b20810 0.58 -0.6
596,792 + SM_b20810 0.58 -0.1
596,792 + SM_b20810 0.58 -0.2
596,792 + SM_b20810 0.58 -1.8
596,792 + SM_b20810 0.58 +0.3
596,793 - SM_b20810 0.58 +0.6
596,793 - SM_b20810 0.58 -0.2
596,793 - SM_b20810 0.58 +1.0
596,793 - SM_b20810 0.58 +0.2
596,793 - SM_b20810 0.58 +0.7
596,793 - SM_b20810 0.58 +0.0
596,793 - SM_b20810 0.58 +0.3
596,793 - SM_b20810 0.58 -0.4
596,866 - SM_b20810 0.62 +0.0
596,962 + SM_b20810 0.66 +0.2
596,962 + SM_b20810 0.66 +0.9
596,962 + SM_b20810 0.66 -0.3
596,989 + SM_b20810 0.68 -0.1
596,989 + SM_b20810 0.68 -1.1
596,989 + SM_b20810 0.68 +0.8
596,990 - SM_b20810 0.68 -0.0
596,991 + SM_b20810 0.68 -0.0
596,992 - SM_b20810 0.68 +0.8
596,992 - SM_b20810 0.68 +0.4
597,144 - SM_b20810 0.75 +0.8
597,151 + SM_b20810 0.76 -0.7
597,152 - SM_b20810 0.76 -0.7
597,155 + SM_b20810 0.76 -0.4
597,155 + SM_b20810 0.76 -0.3
597,155 + SM_b20810 0.76 +0.2
597,155 + SM_b20810 0.76 -1.0
597,155 + SM_b20810 0.76 -0.2
597,155 + SM_b20810 0.76 +0.3
597,155 + SM_b20810 0.76 +0.6
597,156 - SM_b20810 0.76 +0.6
597,156 - SM_b20810 0.76 +1.1
597,156 - SM_b20810 0.76 +0.3
597,187 + SM_b20810 0.78 +1.1
597,188 - SM_b20810 0.78 +0.5
597,210 + SM_b20810 0.79 +0.5
597,233 - SM_b20810 0.80 +1.0
597,233 - SM_b20810 0.80 +0.2
597,273 + SM_b20810 0.82 +0.1
597,273 + SM_b20810 0.82 +1.4
597,274 - SM_b20810 0.82 -0.2
597,305 - SM_b20810 0.83 +0.4
597,326 + SM_b20810 0.84 -0.3
597,326 + SM_b20810 0.84 +1.5
597,327 - SM_b20810 0.84 -0.1
597,381 + SM_b20810 0.87 +0.4
597,381 + SM_b20810 0.87 +0.8
597,382 - SM_b20810 0.87 +0.0
597,382 - SM_b20810 0.87 +1.4
597,382 - SM_b20810 0.87 +0.3
597,399 - SM_b20810 0.88 -0.3
597,514 + +3.8
597,514 + +0.6
597,514 + +0.6
597,514 + -0.7
597,515 - +0.5
597,515 - -0.3
597,515 - +0.3
597,536 + +1.6
597,536 + +0.6
597,537 - +1.6
597,537 - +0.2
597,609 + +0.4
597,610 - -1.6
597,610 - +0.1
597,610 - +0.1
597,610 - -0.8
597,706 - -0.4
597,736 + -0.2
597,775 - -0.8
597,922 + SM_b20811 0.41 -1.0
597,941 + SM_b20811 0.47 -0.4
597,941 + SM_b20811 0.47 -1.0
598,078 + +1.5
598,107 + +0.4
598,176 + +0.2
598,177 - -0.1
598,178 + +0.0
598,179 - +0.2
598,195 + -0.1
598,257 - +0.3
598,332 + SM_b20812 0.15 -0.6
598,333 - SM_b20812 0.15 +0.9
598,390 + SM_b20812 0.21 -1.7
598,414 + SM_b20812 0.23 -0.4
598,524 + SM_b20812 0.33 -0.4
598,524 + SM_b20812 0.33 +0.4
598,524 + SM_b20812 0.33 -0.6
598,525 - SM_b20812 0.33 +0.6
598,552 + SM_b20812 0.36 +0.1
598,815 + SM_b20812 0.61 +0.6
598,816 - SM_b20812 0.61 -0.6
598,819 + SM_b20812 0.62 +1.3
598,819 + SM_b20812 0.62 +0.3
598,819 + SM_b20812 0.62 -0.1
598,820 - SM_b20812 0.62 -0.2
598,823 + SM_b20812 0.62 -0.3
598,823 + SM_b20812 0.62 +0.3
598,823 + SM_b20812 0.62 +0.2
598,824 - SM_b20812 0.62 +0.5
598,838 + SM_b20812 0.63 -0.4
598,856 + SM_b20812 0.65 -0.4
598,857 - SM_b20812 0.65 -0.5
598,857 - SM_b20812 0.65 +0.0
598,915 + SM_b20812 0.71 -0.8
598,915 + SM_b20812 0.71 +0.0
598,915 + SM_b20812 0.71 +0.3
598,964 + SM_b20812 0.75 +1.4
598,964 + SM_b20812 0.75 -0.1
598,964 + SM_b20812 0.75 -0.2
598,964 + SM_b20812 0.75 +1.2
598,964 + SM_b20812 0.75 -0.8
598,964 + SM_b20812 0.75 +0.8
598,964 + SM_b20812 0.75 -1.2
598,965 - SM_b20812 0.75 -1.0
598,965 - SM_b20812 0.75 +0.2
598,965 - SM_b20812 0.75 -0.5
598,965 - SM_b20812 0.75 -1.0
598,966 + SM_b20812 0.76 +0.1
598,966 + SM_b20812 0.76 +0.2
598,966 + SM_b20812 0.76 +0.2
598,967 - SM_b20812 0.76 +0.5
598,990 - SM_b20812 0.78 +0.1

Or see this region's nucleotide sequence