Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20775 and SM_b20776 overlap by 1 nucleotides SM_b20776 and SM_b20777 are separated by 229 nucleotides
SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887
_b20775
SM_b20776: SM_b20776 - adenylate cyclase, at 1,570,887 to 1,572,836
_b20776
SM_b20777: SM_b20777 - transposase of insertion sequence ISRm19 protein, at 1,573,066 to 1,574,031
_b20777
Position (kb)
1570
1571
1572
1573 Strain fitness (log2 ratio)
-2
-1
0
1 at 1569.906 kb on + strand, within SM_b20775 at 1569.934 kb on + strand, within SM_b20775 at 1569.935 kb on - strand, within SM_b20775 at 1569.935 kb on - strand, within SM_b20775 at 1569.936 kb on + strand, within SM_b20775 at 1569.948 kb on - strand, within SM_b20775 at 1569.959 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.097 kb on - strand, within SM_b20775 at 1570.159 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.163 kb on + strand, within SM_b20775 at 1570.164 kb on - strand, within SM_b20775 at 1570.268 kb on - strand, within SM_b20775 at 1570.268 kb on - strand, within SM_b20775 at 1570.269 kb on + strand, within SM_b20775 at 1570.270 kb on - strand, within SM_b20775 at 1570.270 kb on - strand, within SM_b20775 at 1570.348 kb on + strand, within SM_b20775 at 1570.348 kb on + strand, within SM_b20775 at 1570.414 kb on + strand, within SM_b20775 at 1570.646 kb on - strand at 1570.646 kb on - strand at 1570.646 kb on - strand at 1570.662 kb on + strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.023 kb on - strand at 1571.093 kb on + strand at 1571.419 kb on - strand, within SM_b20776 at 1571.472 kb on + strand, within SM_b20776 at 1571.520 kb on + strand, within SM_b20776 at 1571.536 kb on - strand, within SM_b20776 at 1571.536 kb on - strand, within SM_b20776 at 1571.538 kb on + strand, within SM_b20776 at 1571.539 kb on - strand, within SM_b20776 at 1571.721 kb on + strand, within SM_b20776 at 1571.722 kb on - strand, within SM_b20776 at 1571.867 kb on + strand, within SM_b20776 at 1571.868 kb on - strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.889 kb on + strand, within SM_b20776 at 1571.983 kb on - strand, within SM_b20776 at 1572.034 kb on - strand, within SM_b20776 at 1572.034 kb on - strand, within SM_b20776 at 1572.148 kb on + strand, within SM_b20776 at 1572.149 kb on - strand, within SM_b20776 at 1572.255 kb on + strand, within SM_b20776 at 1572.255 kb on + strand, within SM_b20776 at 1572.256 kb on - strand, within SM_b20776 at 1572.489 kb on + strand, within SM_b20776 at 1572.550 kb on - strand, within SM_b20776 at 1572.550 kb on - strand, within SM_b20776 at 1572.578 kb on + strand, within SM_b20776 at 1572.729 kb on + strand at 1572.729 kb on + strand at 1572.801 kb on + strand at 1572.838 kb on + strand at 1572.839 kb on - strand at 1572.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,569,906 + SM_b20775 0.73 -0.1 1,569,934 + SM_b20775 0.74 -1.9 1,569,935 - SM_b20775 0.74 -0.3 1,569,935 - SM_b20775 0.74 -0.0 1,569,936 + SM_b20775 0.74 -0.2 1,569,948 - SM_b20775 0.74 +1.7 1,569,959 - SM_b20775 0.74 +0.4 1,570,097 - SM_b20775 0.78 -0.1 1,570,097 - SM_b20775 0.78 +0.5 1,570,097 - SM_b20775 0.78 -1.8 1,570,159 + SM_b20775 0.80 +0.2 1,570,163 + SM_b20775 0.80 +0.2 1,570,163 + SM_b20775 0.80 -1.5 1,570,163 + SM_b20775 0.80 +0.2 1,570,163 + SM_b20775 0.80 -0.2 1,570,164 - SM_b20775 0.80 +0.2 1,570,268 - SM_b20775 0.83 -0.1 1,570,268 - SM_b20775 0.83 +0.5 1,570,269 + SM_b20775 0.83 -0.3 1,570,270 - SM_b20775 0.83 +0.8 1,570,270 - SM_b20775 0.83 +0.4 1,570,348 + SM_b20775 0.85 -1.1 1,570,348 + SM_b20775 0.85 +0.3 1,570,414 + SM_b20775 0.87 +0.3 1,570,646 - +0.2 1,570,646 - -0.4 1,570,646 - +0.7 1,570,662 + -0.9 1,571,023 - -0.9 1,571,023 - -0.0 1,571,023 - -0.9 1,571,023 - +0.7 1,571,093 + -0.5 1,571,419 - SM_b20776 0.27 -0.5 1,571,472 + SM_b20776 0.30 +1.1 1,571,520 + SM_b20776 0.32 -0.4 1,571,536 - SM_b20776 0.33 -0.9 1,571,536 - SM_b20776 0.33 -1.4 1,571,538 + SM_b20776 0.33 -0.1 1,571,539 - SM_b20776 0.33 -0.4 1,571,721 + SM_b20776 0.43 -1.1 1,571,722 - SM_b20776 0.43 +0.7 1,571,867 + SM_b20776 0.50 +0.1 1,571,868 - SM_b20776 0.50 -0.7 1,571,889 + SM_b20776 0.51 -0.3 1,571,889 + SM_b20776 0.51 -0.2 1,571,889 + SM_b20776 0.51 -0.6 1,571,889 + SM_b20776 0.51 -0.2 1,571,983 - SM_b20776 0.56 +0.5 1,572,034 - SM_b20776 0.59 -0.2 1,572,034 - SM_b20776 0.59 -1.6 1,572,148 + SM_b20776 0.65 -0.3 1,572,149 - SM_b20776 0.65 -0.7 1,572,255 + SM_b20776 0.70 -0.7 1,572,255 + SM_b20776 0.70 -0.1 1,572,256 - SM_b20776 0.70 -0.3 1,572,489 + SM_b20776 0.82 -0.4 1,572,550 - SM_b20776 0.85 -0.0 1,572,550 - SM_b20776 0.85 +0.3 1,572,578 + SM_b20776 0.87 -0.3 1,572,729 + -0.2 1,572,729 + -0.5 1,572,801 + -0.8 1,572,838 + -0.4 1,572,839 - -0.1 1,572,878 - +0.2
Or see this region's nucleotide sequence