Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20756 and SM_b20757 are separated by 225 nucleotides SM_b20757 and SM_b20758 are separated by 11 nucleotides SM_b20758 and SM_b20759 are separated by 122 nucleotides
SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753
_b20756
SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117
_b20757
SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863
_b20758
SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456
_b20759
Position (kb)
1548
1549
1550
1551
1552 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1548.086 kb on - strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.313 kb on + strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.314 kb on - strand, within SM_b20756 at 1548.440 kb on + strand, within SM_b20756 at 1548.658 kb on - strand at 1548.816 kb on + strand at 1549.178 kb on - strand at 1549.208 kb on - strand, within SM_b20757 at 1549.246 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.570 kb on + strand, within SM_b20757 at 1549.571 kb on - strand, within SM_b20757 at 1549.576 kb on + strand, within SM_b20757 at 1549.577 kb on - strand at 1549.623 kb on + strand, within SM_b20757 at 1549.738 kb on + strand, within SM_b20757 at 1549.967 kb on - strand, within SM_b20757 at 1550.162 kb on - strand, within SM_b20757 at 1550.162 kb on - strand, within SM_b20757 at 1550.164 kb on + strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.351 kb on - strand, within SM_b20757 at 1550.632 kb on - strand, within SM_b20757 at 1550.635 kb on + strand, within SM_b20757 at 1550.636 kb on - strand, within SM_b20757 at 1550.647 kb on + strand, within SM_b20757 at 1551.004 kb on + strand at 1551.004 kb on + strand at 1551.005 kb on - strand at 1551.011 kb on - strand at 1551.201 kb on + strand at 1551.371 kb on - strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.409 kb on + strand, within SM_b20758 at 1551.410 kb on - strand, within SM_b20758 at 1551.773 kb on - strand, within SM_b20758 at 1551.823 kb on - strand at 1551.944 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,548,086 - SM_b20756 0.67 +0.7 1,548,313 + SM_b20756 0.78 -0.5 1,548,313 + SM_b20756 0.78 +0.5 1,548,313 + SM_b20756 0.78 -1.0 1,548,314 - SM_b20756 0.78 +1.0 1,548,314 - SM_b20756 0.78 +1.0 1,548,440 + SM_b20756 0.84 -0.3 1,548,658 - -0.9 1,548,816 + +0.6 1,549,178 - +1.1 1,549,208 - SM_b20757 0.11 +2.1 1,549,246 + SM_b20757 0.12 +1.4 1,549,570 + SM_b20757 0.28 +1.3 1,549,570 + SM_b20757 0.28 +0.5 1,549,571 - SM_b20757 0.28 +2.1 1,549,576 + SM_b20757 0.28 +1.2 1,549,577 - +0.1 1,549,623 + SM_b20757 0.30 +1.1 1,549,738 + SM_b20757 0.35 +0.8 1,549,967 - SM_b20757 0.46 +0.8 1,550,162 - SM_b20757 0.55 +0.6 1,550,162 - SM_b20757 0.55 +0.8 1,550,164 + SM_b20757 0.55 +0.2 1,550,351 - SM_b20757 0.64 +0.9 1,550,351 - SM_b20757 0.64 -0.0 1,550,632 - SM_b20757 0.77 +1.5 1,550,635 + SM_b20757 0.77 +1.1 1,550,636 - SM_b20757 0.77 +1.5 1,550,647 + SM_b20757 0.78 +0.9 1,551,004 + +0.5 1,551,004 + +1.6 1,551,005 - +2.1 1,551,011 - +2.1 1,551,201 + -1.2 1,551,371 - SM_b20758 0.33 -1.1 1,551,409 + SM_b20758 0.38 -1.8 1,551,409 + SM_b20758 0.38 -1.3 1,551,410 - SM_b20758 0.38 -2.2 1,551,773 - SM_b20758 0.88 +0.1 1,551,823 - -2.7 1,551,944 - +0.8
Or see this region's nucleotide sequence