Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20676 and SM_b20677 are separated by 98 nucleotides SM_b20677 and SM_b20678 are separated by 47 nucleotides
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.888 kb on + strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1477.889 kb on - strand, within SM_b20676 at 1478.043 kb on + strand, within SM_b20676 at 1478.044 kb on - strand, within SM_b20676 at 1478.339 kb on + strand, within SM_b20676 at 1478.744 kb on - strand at 1478.793 kb on + strand at 1478.794 kb on - strand at 1478.794 kb on - strand at 1478.806 kb on - strand at 1478.806 kb on - strand at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.088 kb on - strand, within SM_b20677 at 1479.272 kb on + strand at 1479.273 kb on - strand at 1479.273 kb on - strand at 1479.480 kb on + strand, within SM_b20678 at 1479.568 kb on + strand, within SM_b20678 at 1480.118 kb on - strand, within SM_b20678
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,477,888 + SM_b20676 0.13 -0.2 1,477,888 + SM_b20676 0.13 +1.3 1,477,888 + SM_b20676 0.13 -0.1 1,477,889 - SM_b20676 0.13 -0.5 1,477,889 - SM_b20676 0.13 -0.1 1,477,889 - SM_b20676 0.13 -0.9 1,478,043 + SM_b20676 0.30 -0.7 1,478,044 - SM_b20676 0.30 -1.9 1,478,339 + SM_b20676 0.62 -3.3 1,478,744 - +0.3 1,478,793 + -0.3 1,478,794 - -0.4 1,478,794 - +0.1 1,478,806 - -0.1 1,478,806 - +0.0 1,478,836 + SM_b20677 0.10 -0.7 1,478,836 + SM_b20677 0.10 -0.5 1,478,836 + SM_b20677 0.10 +0.4 1,478,836 + SM_b20677 0.10 -1.2 1,478,837 - SM_b20677 0.10 -0.4 1,478,837 - SM_b20677 0.10 -0.6 1,479,087 + SM_b20677 0.61 -1.0 1,479,087 + SM_b20677 0.61 -0.5 1,479,088 - SM_b20677 0.61 -0.7 1,479,272 + +0.3 1,479,273 - +0.7 1,479,273 - +0.6 1,479,480 + SM_b20678 0.12 -0.4 1,479,568 + SM_b20678 0.19 +0.1 1,480,118 - SM_b20678 0.62 -0.4
Or see this region's nucleotide sequence