Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20612 and SM_b20613 are separated by 3 nucleotides SM_b20613 and SM_b20614 are separated by 124 nucleotides
SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999
_b20612
SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385
_b20613
SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567
_b20614
Position (kb)
1630
1631
1632 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.161 kb on + strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.162 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.165 kb on - strand, within SM_b20612 at 1629.413 kb on - strand, within SM_b20612 at 1629.421 kb on - strand, within SM_b20612 at 1629.928 kb on + strand at 1629.929 kb on - strand at 1630.249 kb on - strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.300 kb on + strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.301 kb on - strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.909 kb on + strand, within SM_b20613 at 1630.910 kb on - strand, within SM_b20613 at 1630.912 kb on + strand, within SM_b20613 at 1631.057 kb on - strand, within SM_b20613 at 1631.203 kb on + strand, within SM_b20613 at 1631.204 kb on - strand, within SM_b20613 at 1631.335 kb on + strand at 1631.336 kb on - strand at 1631.336 kb on - strand at 1631.427 kb on - strand at 1631.511 kb on + strand at 1631.511 kb on + strand at 1631.779 kb on - strand, within SM_b20614 at 1631.779 kb on - strand, within SM_b20614 at 1631.960 kb on - strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.073 kb on + strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.074 kb on - strand, within SM_b20614 at 1632.112 kb on + strand, within SM_b20614
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,629,161 + SM_b20612 0.55 +0.6 1,629,161 + SM_b20612 0.55 +0.7 1,629,161 + SM_b20612 0.55 +1.3 1,629,161 + SM_b20612 0.55 +1.0 1,629,162 - SM_b20612 0.55 +0.7 1,629,162 - SM_b20612 0.55 +1.1 1,629,165 - SM_b20612 0.55 +0.7 1,629,165 - SM_b20612 0.55 +0.1 1,629,413 - SM_b20612 0.69 -0.9 1,629,421 - SM_b20612 0.69 -0.0 1,629,928 + +0.3 1,629,929 - +1.0 1,630,249 - SM_b20613 0.18 +1.8 1,630,300 + SM_b20613 0.21 +2.5 1,630,300 + SM_b20613 0.21 +2.0 1,630,300 + SM_b20613 0.21 +2.1 1,630,301 - SM_b20613 0.22 +3.5 1,630,301 - SM_b20613 0.22 +1.9 1,630,909 + SM_b20613 0.66 +2.0 1,630,909 + SM_b20613 0.66 +2.1 1,630,910 - SM_b20613 0.66 +1.8 1,630,912 + SM_b20613 0.66 +1.2 1,631,057 - SM_b20613 0.76 +1.5 1,631,203 + SM_b20613 0.87 +2.3 1,631,204 - SM_b20613 0.87 +2.1 1,631,335 + +1.8 1,631,336 - +2.0 1,631,336 - +2.6 1,631,427 - +0.4 1,631,511 + +0.2 1,631,511 + -0.5 1,631,779 - SM_b20614 0.13 -0.4 1,631,779 - SM_b20614 0.13 +0.3 1,631,960 - SM_b20614 0.22 +0.1 1,632,073 + SM_b20614 0.27 -0.7 1,632,073 + SM_b20614 0.27 +1.7 1,632,073 + SM_b20614 0.27 +0.0 1,632,073 + SM_b20614 0.27 -0.5 1,632,073 + SM_b20614 0.27 +0.2 1,632,073 + SM_b20614 0.27 +0.0 1,632,074 - SM_b20614 0.27 -0.7 1,632,074 - SM_b20614 0.27 -0.1 1,632,112 + SM_b20614 0.29 +0.7
Or see this region's nucleotide sequence