Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20611

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20610 and SM_b20611 are separated by 112 nucleotidesSM_b20611 and SM_b20612 are separated by 231 nucleotides SM_b20610: SM_b20610 - two-component response regulator protein, at 1,625,535 to 1,626,464 _b20610 SM_b20611: SM_b20611 - C4-dicarboxylate transporter DctA, at 1,626,577 to 1,627,902 _b20611 SM_b20612: SM_b20612 - C4-dicarboxylate transport sensor protein, at 1,628,134 to 1,629,999 _b20612 Position (kb) 1626 1627 1628Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1625.644 kb on + strand, within SM_b20610at 1625.882 kb on + strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.184 kb on - strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.210 kb on + strand, within SM_b20610at 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.393 kb on + strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.394 kb on - strandat 1626.579 kb on - strandat 1626.896 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.950 kb on + strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.951 kb on - strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.954 kb on + strand, within SM_b20611at 1626.955 kb on - strand, within SM_b20611at 1627.109 kb on + strand, within SM_b20611at 1627.142 kb on + strand, within SM_b20611at 1627.142 kb on + strand, within SM_b20611at 1627.194 kb on - strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.241 kb on + strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.242 kb on - strand, within SM_b20611at 1627.515 kb on - strand, within SM_b20611at 1627.555 kb on - strand, within SM_b20611at 1627.634 kb on + strand, within SM_b20611at 1627.635 kb on - strand, within SM_b20611at 1627.793 kb on + strandat 1627.844 kb on + strandat 1627.845 kb on - strandat 1627.845 kb on - strandat 1627.856 kb on + strandat 1627.906 kb on - strandat 1628.261 kb on + strandat 1628.578 kb on + strand, within SM_b20612at 1628.579 kb on - strand, within SM_b20612at 1628.670 kb on + strand, within SM_b20612at 1628.671 kb on - strand, within SM_b20612at 1628.671 kb on - strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.776 kb on + strand, within SM_b20612at 1628.777 kb on - strand, within SM_b20612

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,625,644 + SM_b20610 0.12 -1.4
1,625,882 + SM_b20610 0.37 -1.4
1,626,184 - SM_b20610 0.70 -0.8
1,626,184 - SM_b20610 0.70 +0.3
1,626,184 - SM_b20610 0.70 -0.5
1,626,210 + SM_b20610 0.73 +0.0
1,626,210 + SM_b20610 0.73 -0.2
1,626,210 + SM_b20610 0.73 +0.1
1,626,393 + -0.7
1,626,393 + +0.4
1,626,393 + -0.9
1,626,393 + -0.3
1,626,393 + +0.5
1,626,393 + -0.1
1,626,393 + +0.4
1,626,393 + +0.2
1,626,393 + +0.0
1,626,393 + +1.1
1,626,393 + -0.3
1,626,393 + -0.2
1,626,394 - -0.8
1,626,394 - -0.1
1,626,394 - +0.6
1,626,394 - +0.1
1,626,394 - -2.3
1,626,579 - +0.4
1,626,896 + SM_b20611 0.24 +1.1
1,626,950 + SM_b20611 0.28 +0.4
1,626,950 + SM_b20611 0.28 +0.7
1,626,950 + SM_b20611 0.28 +0.4
1,626,951 - SM_b20611 0.28 +1.4
1,626,951 - SM_b20611 0.28 +0.5
1,626,951 - SM_b20611 0.28 +0.9
1,626,954 + SM_b20611 0.28 +0.5
1,626,954 + SM_b20611 0.28 +1.2
1,626,954 + SM_b20611 0.28 +1.1
1,626,954 + SM_b20611 0.28 -0.1
1,626,955 - SM_b20611 0.29 +2.8
1,627,109 + SM_b20611 0.40 +0.0
1,627,142 + SM_b20611 0.43 +0.0
1,627,142 + SM_b20611 0.43 -1.5
1,627,194 - SM_b20611 0.47 +0.1
1,627,241 + SM_b20611 0.50 +0.5
1,627,241 + SM_b20611 0.50 +0.3
1,627,242 - SM_b20611 0.50 +1.0
1,627,242 - SM_b20611 0.50 +0.4
1,627,242 - SM_b20611 0.50 +1.0
1,627,242 - SM_b20611 0.50 +0.5
1,627,242 - SM_b20611 0.50 -1.1
1,627,242 - SM_b20611 0.50 +1.0
1,627,515 - SM_b20611 0.71 +0.6
1,627,555 - SM_b20611 0.74 +0.5
1,627,634 + SM_b20611 0.80 +0.6
1,627,635 - SM_b20611 0.80 +0.3
1,627,793 + +0.3
1,627,844 + +0.4
1,627,845 - +0.1
1,627,845 - +0.1
1,627,856 + -0.4
1,627,906 - +1.0
1,628,261 + +0.3
1,628,578 + SM_b20612 0.24 -1.1
1,628,579 - SM_b20612 0.24 +0.3
1,628,670 + SM_b20612 0.29 +2.4
1,628,671 - SM_b20612 0.29 -0.4
1,628,671 - SM_b20612 0.29 -0.7
1,628,776 + SM_b20612 0.34 +0.0
1,628,776 + SM_b20612 0.34 -0.8
1,628,776 + SM_b20612 0.34 -0.7
1,628,777 - SM_b20612 0.34 +0.2

Or see this region's nucleotide sequence