Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20568

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20786 and SM_b20787 are separated by 6 nucleotidesSM_b20787 and SM_b20568 are separated by 101 nucleotidesSM_b20568 and SM_b20569 are separated by 139 nucleotidesSM_b20569 and SM_b20570 are separated by 10 nucleotides SM_b20786: SM_b20786 - branched-chain amino acid ABC transporter permease, at 1,578,587 to 1,579,588 _b20786 SM_b20787: SM_b20787 - branched-chain amino acid ABC transporter permease, at 1,579,595 to 1,580,458 _b20787 SM_b20568: SM_b20568 - amino acid ABC transporter substrate-binding protein, at 1,580,560 to 1,581,771 _b20568 SM_b20569: SM_b20569 - ABC transporter ATP-binding protein, at 1,581,911 to 1,582,681 _b20569 SM_b20570: SM_b20570 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,582,692 to 1,583,684 _b20570 Position (kb) 1580 1581 1582Strain fitness (log2 ratio) -1 0 1 2at 1579.596 kb on + strandat 1579.596 kb on + strandat 1579.596 kb on + strandat 1579.597 kb on - strandat 1579.597 kb on - strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.601 kb on - strandat 1579.601 kb on - strandat 1579.601 kb on - strandat 1579.656 kb on + strandat 1579.656 kb on + strandat 1579.657 kb on - strandat 1579.689 kb on + strand, within SM_b20787at 1579.703 kb on - strand, within SM_b20787at 1579.795 kb on - strand, within SM_b20787at 1579.795 kb on - strand, within SM_b20787at 1579.806 kb on + strand, within SM_b20787at 1579.806 kb on + strand, within SM_b20787at 1579.807 kb on - strand, within SM_b20787at 1579.809 kb on + strand, within SM_b20787at 1579.890 kb on + strand, within SM_b20787at 1579.891 kb on - strand, within SM_b20787at 1580.030 kb on + strand, within SM_b20787at 1580.124 kb on + strand, within SM_b20787at 1580.125 kb on - strand, within SM_b20787at 1580.196 kb on + strand, within SM_b20787at 1580.196 kb on + strand, within SM_b20787at 1580.197 kb on - strand, within SM_b20787at 1580.209 kb on - strand, within SM_b20787at 1580.304 kb on + strand, within SM_b20787at 1580.305 kb on - strand, within SM_b20787at 1580.315 kb on - strand, within SM_b20787at 1580.316 kb on + strand, within SM_b20787at 1580.438 kb on + strandat 1580.470 kb on - strandat 1580.544 kb on + strandat 1580.545 kb on - strandat 1580.545 kb on - strandat 1580.621 kb on + strandat 1580.624 kb on + strandat 1580.624 kb on + strandat 1580.625 kb on - strandat 1580.625 kb on - strandat 1580.660 kb on + strandat 1580.677 kb on - strandat 1580.796 kb on - strand, within SM_b20568at 1580.816 kb on + strand, within SM_b20568at 1580.918 kb on + strand, within SM_b20568at 1581.443 kb on + strand, within SM_b20568at 1581.443 kb on + strand, within SM_b20568at 1581.444 kb on - strand, within SM_b20568at 1581.458 kb on + strand, within SM_b20568at 1581.459 kb on - strand, within SM_b20568at 1581.475 kb on + strand, within SM_b20568at 1581.476 kb on - strand, within SM_b20568at 1581.536 kb on + strand, within SM_b20568at 1581.536 kb on + strand, within SM_b20568at 1581.537 kb on - strand, within SM_b20568at 1581.585 kb on + strand, within SM_b20568at 1581.586 kb on - strand, within SM_b20568at 1581.586 kb on - strand, within SM_b20568at 1581.587 kb on + strand, within SM_b20568at 1581.588 kb on - strand, within SM_b20568at 1581.588 kb on - strand, within SM_b20568at 1581.731 kb on + strandat 1581.732 kb on - strandat 1581.783 kb on - strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.912 kb on + strandat 1581.913 kb on - strandat 1582.038 kb on - strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.205 kb on + strand, within SM_b20569at 1582.254 kb on - strand, within SM_b20569at 1582.305 kb on + strand, within SM_b20569at 1582.305 kb on + strand, within SM_b20569at 1582.306 kb on - strand, within SM_b20569at 1582.306 kb on - strand, within SM_b20569at 1582.590 kb on - strand, within SM_b20569at 1582.747 kb on + strandat 1582.748 kb on - strandat 1582.748 kb on - strandat 1582.748 kb on - strandat 1582.748 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,579,596 + +0.7
1,579,596 + -0.6
1,579,596 + -0.1
1,579,597 - +1.1
1,579,597 - +0.6
1,579,600 + -1.4
1,579,600 + +1.0
1,579,600 + -0.3
1,579,600 + +0.8
1,579,600 + +0.3
1,579,601 - +0.3
1,579,601 - +0.3
1,579,601 - +0.8
1,579,656 + -1.1
1,579,656 + +0.1
1,579,657 - +1.3
1,579,689 + SM_b20787 0.11 -0.2
1,579,703 - SM_b20787 0.12 -0.5
1,579,795 - SM_b20787 0.23 -1.1
1,579,795 - SM_b20787 0.23 -0.4
1,579,806 + SM_b20787 0.24 +0.0
1,579,806 + SM_b20787 0.24 +0.1
1,579,807 - SM_b20787 0.25 +0.3
1,579,809 + SM_b20787 0.25 -0.5
1,579,890 + SM_b20787 0.34 +0.1
1,579,891 - SM_b20787 0.34 +0.2
1,580,030 + SM_b20787 0.50 -0.1
1,580,124 + SM_b20787 0.61 +0.1
1,580,125 - SM_b20787 0.61 -0.1
1,580,196 + SM_b20787 0.70 -0.6
1,580,196 + SM_b20787 0.70 -0.4
1,580,197 - SM_b20787 0.70 -1.1
1,580,209 - SM_b20787 0.71 -0.1
1,580,304 + SM_b20787 0.82 -1.1
1,580,305 - SM_b20787 0.82 -0.3
1,580,315 - SM_b20787 0.83 -0.9
1,580,316 + SM_b20787 0.83 -0.8
1,580,438 + +0.3
1,580,470 - -0.1
1,580,544 + -0.0
1,580,545 - -0.6
1,580,545 - -0.5
1,580,621 + -0.0
1,580,624 + +0.1
1,580,624 + +0.7
1,580,625 - -0.3
1,580,625 - -0.9
1,580,660 + -1.2
1,580,677 - +0.4
1,580,796 - SM_b20568 0.19 +0.4
1,580,816 + SM_b20568 0.21 +0.3
1,580,918 + SM_b20568 0.30 +0.9
1,581,443 + SM_b20568 0.73 -0.1
1,581,443 + SM_b20568 0.73 +0.4
1,581,444 - SM_b20568 0.73 +0.5
1,581,458 + SM_b20568 0.74 -0.2
1,581,459 - SM_b20568 0.74 +0.4
1,581,475 + SM_b20568 0.75 +1.0
1,581,476 - SM_b20568 0.76 -0.0
1,581,536 + SM_b20568 0.81 +0.2
1,581,536 + SM_b20568 0.81 -0.4
1,581,537 - SM_b20568 0.81 -1.6
1,581,585 + SM_b20568 0.85 +0.9
1,581,586 - SM_b20568 0.85 -0.2
1,581,586 - SM_b20568 0.85 -0.3
1,581,587 + SM_b20568 0.85 +0.1
1,581,588 - SM_b20568 0.85 +0.3
1,581,588 - SM_b20568 0.85 +2.3
1,581,731 + -0.2
1,581,732 - -0.4
1,581,783 - +0.6
1,581,843 + +0.2
1,581,843 + -0.5
1,581,843 + +0.3
1,581,843 + +0.2
1,581,843 + +0.5
1,581,843 + +0.3
1,581,843 + -0.7
1,581,844 - -0.6
1,581,844 - +0.0
1,581,844 - -0.3
1,581,844 - +0.4
1,581,844 - -0.7
1,581,844 - +0.1
1,581,844 - +0.5
1,581,844 - +0.6
1,581,844 - -0.8
1,581,844 - +0.2
1,581,844 - -0.7
1,581,912 + -0.2
1,581,913 - +0.9
1,582,038 - SM_b20569 0.16 -0.6
1,582,059 + SM_b20569 0.19 +0.3
1,582,059 + SM_b20569 0.19 +0.2
1,582,059 + SM_b20569 0.19 +0.5
1,582,060 - SM_b20569 0.19 -0.4
1,582,060 - SM_b20569 0.19 +0.3
1,582,060 - SM_b20569 0.19 -0.2
1,582,205 + SM_b20569 0.38 -0.3
1,582,254 - SM_b20569 0.44 +0.1
1,582,305 + SM_b20569 0.51 -0.6
1,582,305 + SM_b20569 0.51 +0.4
1,582,306 - SM_b20569 0.51 +0.0
1,582,306 - SM_b20569 0.51 +0.2
1,582,590 - SM_b20569 0.88 +0.7
1,582,747 + +1.3
1,582,748 - -0.8
1,582,748 - -0.5
1,582,748 - +0.3
1,582,748 - +0.5

Or see this region's nucleotide sequence