Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20552 and SM_b20553 are separated by 20 nucleotides SM_b20553 and SM_b20554 are separated by 357 nucleotides SM_b20554 and SM_b20555 are separated by 3 nucleotides SM_b20555 and SM_b20556 are separated by 456 nucleotides
SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881
_b20552
SM_b20553: SM_b20553 - hypothetical protein, at 578,902 to 579,096
_b20553
SM_b20554: SM_b20554 - hypothetical protein, at 579,454 to 579,963
_b20554
SM_b20555: SM_b20555 - hypothetical protein, at 579,967 to 580,188
_b20555
SM_b20556: SM_b20556 - hypothetical protein, at 580,645 to 581,325
_b20556
Position (kb) 579
580 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 578.537 kb on + strand, within SM_b20552 at 578.599 kb on + strand, within SM_b20552 at 578.600 kb on - strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.645 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.706 kb on + strand, within SM_b20552 at 578.735 kb on + strand, within SM_b20552 at 578.779 kb on - strand, within SM_b20552 at 578.981 kb on + strand, within SM_b20553 at 579.010 kb on - strand, within SM_b20553 at 579.056 kb on + strand, within SM_b20553 at 579.091 kb on + strand at 579.091 kb on + strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.092 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.217 kb on + strand at 579.218 kb on - strand at 579.219 kb on + strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.220 kb on - strand at 579.248 kb on + strand at 579.249 kb on - strand at 579.256 kb on - strand at 579.256 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.291 kb on - strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.297 kb on + strand at 579.298 kb on - strand at 579.298 kb on - strand at 579.436 kb on + strand at 579.437 kb on - strand at 579.467 kb on + strand at 579.497 kb on + strand at 579.497 kb on + strand at 579.498 kb on - strand at 579.509 kb on - strand, within SM_b20554 at 579.509 kb on - strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand, within SM_b20554 at 579.619 kb on + strand at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.620 kb on - strand, within SM_b20554 at 579.627 kb on + strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.628 kb on - strand, within SM_b20554 at 579.696 kb on - strand, within SM_b20554 at 579.912 kb on + strand, within SM_b20554 at 579.913 kb on - strand at 579.913 kb on - strand at 580.072 kb on + strand, within SM_b20555 at 580.073 kb on - strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.077 kb on + strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.078 kb on - strand, within SM_b20555 at 580.227 kb on + strand at 580.227 kb on + strand at 580.228 kb on - strand at 580.228 kb on - strand at 580.262 kb on - strand at 580.348 kb on + strand at 580.349 kb on - strand at 580.385 kb on + strand at 580.539 kb on + strand at 580.555 kb on - strand at 580.650 kb on + strand at 580.650 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.683 kb on + strand at 580.746 kb on + strand, within SM_b20556
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 578,537 + SM_b20552 0.53 -1.6 578,599 + SM_b20552 0.61 +1.8 578,600 - SM_b20552 0.61 -1.1 578,645 + SM_b20552 0.68 +0.1 578,645 + SM_b20552 0.68 -1.0 578,706 + SM_b20552 0.76 -0.5 578,706 + SM_b20552 0.76 +0.2 578,735 + SM_b20552 0.80 -0.0 578,779 - SM_b20552 0.86 +0.3 578,981 + SM_b20553 0.41 -0.2 579,010 - SM_b20553 0.55 -0.1 579,056 + SM_b20553 0.79 +0.1 579,091 + +0.2 579,091 + -0.5 579,092 - -0.4 579,092 - -0.4 579,092 - +0.6 579,106 + +0.4 579,106 + -0.6 579,217 + -0.8 579,217 + +0.2 579,217 + -0.9 579,218 - +1.1 579,219 + +0.2 579,220 - -1.0 579,220 - +0.3 579,220 - +0.7 579,220 - +0.2 579,248 + -0.5 579,249 - +1.1 579,256 - -0.7 579,256 - -0.6 579,291 - +0.6 579,291 - +0.6 579,291 - -0.5 579,291 - -0.4 579,291 - -0.0 579,297 + +1.1 579,297 + -0.5 579,297 + +0.2 579,297 + -1.4 579,298 - -0.3 579,298 - +0.1 579,436 + +0.3 579,437 - -0.4 579,467 + +0.5 579,497 + -0.2 579,497 + +0.2 579,498 - -0.6 579,509 - SM_b20554 0.11 +0.4 579,509 - SM_b20554 0.11 +0.2 579,619 + SM_b20554 0.32 +0.6 579,619 + SM_b20554 0.32 +1.2 579,619 + +0.4 579,620 - SM_b20554 0.33 +0.2 579,620 - SM_b20554 0.33 +0.3 579,620 - SM_b20554 0.33 +0.3 579,627 + SM_b20554 0.34 -0.7 579,628 - SM_b20554 0.34 +0.4 579,628 - SM_b20554 0.34 +0.6 579,696 - SM_b20554 0.47 -0.4 579,912 + SM_b20554 0.90 +2.5 579,913 - +4.7 579,913 - +1.1 580,072 + SM_b20555 0.47 +0.6 580,073 - SM_b20555 0.48 -0.1 580,077 + SM_b20555 0.50 -0.6 580,077 + SM_b20555 0.50 -0.9 580,078 - SM_b20555 0.50 +0.4 580,078 - SM_b20555 0.50 -0.6 580,227 + -0.1 580,227 + -0.2 580,228 - -0.8 580,228 - +0.2 580,262 - -0.2 580,348 + +0.2 580,349 - +0.4 580,385 + -0.0 580,539 + +0.2 580,555 - -0.1 580,650 + -0.2 580,650 + +0.2 580,683 + -0.0 580,683 + +0.0 580,683 + +0.6 580,746 + SM_b20556 0.15 -0.6
Or see this region's nucleotide sequence