Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20518 and SM_b20519 are separated by 432 nucleotides
SM_b20518: SM_b20518 - hypothetical protein, at 542,829 to 543,548
_b20518
SM_b20519: SM_b20519 - hypothetical protein, at 543,981 to 544,349
_b20519
Position (kb) 543
544
545 Strain fitness (log2 ratio) -2
-1
0
1 at 543.049 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.100 kb on - strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.103 kb on + strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.104 kb on - strand, within SM_b20518 at 543.105 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.147 kb on + strand, within SM_b20518 at 543.148 kb on - strand at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.148 kb on - strand, within SM_b20518 at 543.458 kb on - strand, within SM_b20518 at 543.486 kb on - strand at 543.486 kb on - strand at 543.486 kb on - strand at 544.178 kb on - strand, within SM_b20519 at 544.267 kb on + strand, within SM_b20519 at 544.330 kb on + strand at 544.371 kb on + strand at 544.379 kb on + strand at 544.380 kb on - strand at 544.408 kb on + strand at 544.409 kb on - strand at 544.554 kb on + strand at 544.555 kb on - strand at 544.604 kb on + strand at 544.604 kb on + strand at 544.658 kb on + strand at 544.658 kb on + strand at 544.659 kb on - strand at 544.659 kb on - strand at 544.665 kb on + strand at 544.680 kb on + strand at 544.680 kb on + strand at 544.712 kb on - strand at 544.712 kb on - strand at 544.743 kb on + strand at 544.743 kb on + strand at 544.743 kb on + strand at 544.744 kb on - strand at 544.799 kb on + strand at 544.800 kb on - strand at 544.869 kb on + strand at 544.920 kb on + strand at 544.921 kb on - strand at 544.925 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.983 kb on + strand at 544.984 kb on - strand at 544.984 kb on - strand at 544.984 kb on - strand at 544.988 kb on - strand at 544.988 kb on - strand at 545.046 kb on + strand at 545.046 kb on + strand at 545.046 kb on + strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.047 kb on - strand at 545.123 kb on + strand at 545.123 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 543,049 - SM_b20518 0.31 -0.6 543,100 - SM_b20518 0.38 +0.0 543,100 - SM_b20518 0.38 +1.0 543,103 + SM_b20518 0.38 +0.5 543,103 + SM_b20518 0.38 -0.3 543,103 + SM_b20518 0.38 -0.7 543,103 + SM_b20518 0.38 +1.2 543,103 + SM_b20518 0.38 -0.6 543,103 + SM_b20518 0.38 +0.2 543,104 - SM_b20518 0.38 -0.9 543,104 - SM_b20518 0.38 +1.0 543,104 - SM_b20518 0.38 -0.3 543,105 + SM_b20518 0.38 +0.5 543,147 + SM_b20518 0.44 +0.2 543,147 + SM_b20518 0.44 -0.3 543,148 - -0.0 543,148 - SM_b20518 0.44 -2.7 543,148 - SM_b20518 0.44 -0.4 543,148 - SM_b20518 0.44 -0.8 543,458 - SM_b20518 0.87 -0.4 543,486 - -0.2 543,486 - +0.3 543,486 - -0.4 544,178 - SM_b20519 0.53 +0.3 544,267 + SM_b20519 0.78 +0.8 544,330 + +0.1 544,371 + +0.4 544,379 + +0.2 544,380 - +1.4 544,408 + -0.2 544,409 - -1.8 544,554 + -0.1 544,555 - -0.9 544,604 + -0.6 544,604 + +0.5 544,658 + +0.5 544,658 + +0.2 544,659 - -0.3 544,659 - +0.4 544,665 + -1.6 544,680 + +0.6 544,680 + +0.6 544,712 - -0.0 544,712 - -0.2 544,743 + -0.2 544,743 + +0.1 544,743 + -0.5 544,744 - -0.5 544,799 + -0.2 544,800 - -0.6 544,869 + -0.3 544,920 + +0.1 544,921 - +0.6 544,925 + +0.2 544,983 + -0.2 544,983 + +0.3 544,983 + -0.1 544,983 + -0.3 544,984 - -0.3 544,984 - -0.1 544,984 - -0.8 544,988 - +0.1 544,988 - +0.1 545,046 + +0.2 545,046 + -1.2 545,046 + +1.6 545,047 - -0.1 545,047 - +0.0 545,047 - -0.4 545,047 - -2.6 545,123 + +0.2 545,123 + -1.0
Or see this region's nucleotide sequence