Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20504 and SM_b20505 are separated by 270 nucleotides SM_b20505 and SM_b20506 are separated by 43 nucleotides SM_b20506 and SM_b20507 are separated by 2 nucleotides
SM_b20504: SM_b20504 - sugar ABC transporter substrate-binding protein, at 525,801 to 526,802
_b20504
SM_b20505: SM_b20505 - trifolitoxin immunity protein, at 527,073 to 527,861
_b20505
SM_b20506: SM_b20506 - L-arabinose transporter permease, at 527,905 to 528,858
_b20506
SM_b20507: SM_b20507 - L-arabinose transporter ATP-binding protein, at 528,861 to 530,387
_b20507
Position (kb) 527
528 Strain fitness (log2 ratio) -2
-1
0
1 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.213 kb on + strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.214 kb on - strand, within SM_b20504 at 526.349 kb on - strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.393 kb on + strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.394 kb on - strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.397 kb on + strand, within SM_b20504 at 526.426 kb on + strand, within SM_b20504 at 526.427 kb on - strand, within SM_b20504 at 526.432 kb on - strand, within SM_b20504 at 526.603 kb on + strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.622 kb on - strand, within SM_b20504 at 526.685 kb on - strand, within SM_b20504 at 526.718 kb on - strand at 526.928 kb on + strand at 526.938 kb on + strand at 526.939 kb on - strand at 527.017 kb on - strand at 527.017 kb on - strand at 527.042 kb on + strand at 527.043 kb on - strand at 527.061 kb on + strand at 527.062 kb on - strand at 527.062 kb on - strand at 527.188 kb on + strand, within SM_b20505 at 527.188 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.274 kb on + strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.275 kb on - strand, within SM_b20505 at 527.333 kb on - strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.353 kb on + strand, within SM_b20505 at 527.644 kb on + strand, within SM_b20505 at 527.658 kb on + strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.741 kb on - strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.759 kb on + strand, within SM_b20505 at 527.857 kb on + strand at 527.857 kb on + strand at 527.857 kb on + strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.858 kb on - strand at 527.860 kb on - strand at 527.887 kb on + strand at 527.937 kb on + strand at 527.937 kb on + strand at 527.938 kb on - strand at 527.984 kb on + strand at 527.990 kb on + strand at 527.990 kb on + strand at 527.991 kb on - strand at 527.991 kb on - strand at 527.991 kb on - strand at 528.053 kb on - strand, within SM_b20506 at 528.202 kb on + strand, within SM_b20506 at 528.203 kb on - strand, within SM_b20506 at 528.316 kb on - strand, within SM_b20506 at 528.470 kb on - strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.496 kb on + strand, within SM_b20506 at 528.589 kb on + strand, within SM_b20506 at 528.640 kb on + strand, within SM_b20506
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 526,213 + SM_b20504 0.41 -0.2 526,213 + SM_b20504 0.41 +0.3 526,213 + SM_b20504 0.41 -0.2 526,214 - SM_b20504 0.41 +0.2 526,214 - SM_b20504 0.41 -0.0 526,349 - SM_b20504 0.55 -0.7 526,393 + SM_b20504 0.59 -2.7 526,393 + SM_b20504 0.59 +0.8 526,393 + SM_b20504 0.59 +0.1 526,393 + SM_b20504 0.59 -0.4 526,393 + SM_b20504 0.59 -0.7 526,393 + SM_b20504 0.59 -0.1 526,393 + SM_b20504 0.59 -1.4 526,393 + SM_b20504 0.59 +0.3 526,394 - SM_b20504 0.59 +0.3 526,394 - SM_b20504 0.59 +0.8 526,394 - SM_b20504 0.59 -0.2 526,394 - SM_b20504 0.59 +0.1 526,394 - SM_b20504 0.59 +1.0 526,397 + SM_b20504 0.59 -0.8 526,397 + SM_b20504 0.59 +0.3 526,426 + SM_b20504 0.62 -1.7 526,427 - SM_b20504 0.62 -1.2 526,432 - SM_b20504 0.63 -0.2 526,603 + SM_b20504 0.80 -0.1 526,622 - SM_b20504 0.82 +0.2 526,622 - SM_b20504 0.82 +0.2 526,685 - SM_b20504 0.88 -1.1 526,718 - +0.3 526,928 + +0.4 526,938 + -0.5 526,939 - -0.3 527,017 - -0.1 527,017 - +0.6 527,042 + -0.3 527,043 - -0.7 527,061 + -0.9 527,062 - +0.1 527,062 - -1.0 527,188 + SM_b20505 0.15 +0.0 527,188 + SM_b20505 0.15 -0.3 527,274 + SM_b20505 0.25 +0.7 527,274 + SM_b20505 0.25 -1.3 527,274 + SM_b20505 0.25 -0.8 527,274 + SM_b20505 0.25 -2.3 527,275 - SM_b20505 0.26 -0.3 527,275 - SM_b20505 0.26 -1.0 527,275 - SM_b20505 0.26 -0.7 527,333 - SM_b20505 0.33 -0.4 527,353 + SM_b20505 0.35 -0.4 527,353 + SM_b20505 0.35 -0.6 527,644 + SM_b20505 0.72 -0.6 527,658 + SM_b20505 0.74 -0.3 527,741 - SM_b20505 0.85 -0.6 527,741 - SM_b20505 0.85 +0.0 527,741 - SM_b20505 0.85 -0.0 527,741 - SM_b20505 0.85 +0.1 527,741 - SM_b20505 0.85 +1.0 527,759 + SM_b20505 0.87 -0.2 527,759 + SM_b20505 0.87 -0.1 527,759 + SM_b20505 0.87 -1.5 527,857 + -0.4 527,857 + -0.1 527,857 + +0.5 527,858 - -0.8 527,858 - +0.4 527,858 - -0.2 527,860 - -1.8 527,887 + -0.6 527,937 + -0.3 527,937 + -0.7 527,938 - +1.0 527,984 + -0.2 527,990 + -0.5 527,990 + +0.6 527,991 - +0.3 527,991 - -0.1 527,991 - +0.2 528,053 - SM_b20506 0.16 +0.1 528,202 + SM_b20506 0.31 -0.6 528,203 - SM_b20506 0.31 +0.6 528,316 - SM_b20506 0.43 -0.7 528,470 - SM_b20506 0.59 +0.3 528,496 + SM_b20506 0.62 +0.3 528,496 + SM_b20506 0.62 +0.2 528,496 + SM_b20506 0.62 -1.3 528,589 + SM_b20506 0.72 +0.1 528,640 + SM_b20506 0.77 -0.4
Or see this region's nucleotide sequence