Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20479 and SM_b20480 are separated by 6 nucleotides SM_b20480 and SM_b20481 are separated by 123 nucleotides SM_b20481 and SM_b20482 are separated by 1 nucleotides
SM_b20479: SM_b20479 - dipeptide ABC transporter ATP-binding protein, at 493,209 to 494,006
_b20479
SM_b20480: SM_b20480 - transcriptional regulator, at 494,013 to 494,795
_b20480
SM_b20481: SM_b20481 - asparagine synthetase (glutamine amidotransferase) protein, at 494,919 to 496,694
_b20481
SM_b20482: SM_b20482 - hypothetical protein, at 496,696 to 498,483
_b20482
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 493.959 kb on + strand at 493.959 kb on + strand at 493.960 kb on - strand at 493.962 kb on - strand at 494.084 kb on + strand at 494.085 kb on - strand at 494.128 kb on - strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.215 kb on + strand, within SM_b20480 at 494.368 kb on + strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.369 kb on - strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.370 kb on + strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.371 kb on - strand, within SM_b20480 at 494.469 kb on + strand, within SM_b20480 at 494.470 kb on - strand, within SM_b20480 at 494.632 kb on - strand, within SM_b20480 at 494.744 kb on + strand at 494.744 kb on + strand at 494.745 kb on - strand at 494.764 kb on - strand at 495.153 kb on + strand, within SM_b20481 at 495.361 kb on - strand, within SM_b20481 at 495.362 kb on + strand, within SM_b20481 at 495.374 kb on - strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.465 kb on + strand, within SM_b20481 at 495.466 kb on - strand, within SM_b20481 at 495.886 kb on + strand, within SM_b20481 at 495.961 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 495.979 kb on - strand, within SM_b20481 at 496.018 kb on + strand, within SM_b20481 at 496.019 kb on - strand, within SM_b20481 at 496.229 kb on + strand, within SM_b20481 at 496.230 kb on - strand, within SM_b20481 at 496.268 kb on + strand, within SM_b20481 at 496.268 kb on + strand, within SM_b20481 at 496.269 kb on - strand, within SM_b20481 at 496.269 kb on - strand, within SM_b20481 at 496.304 kb on + strand, within SM_b20481 at 496.304 kb on + strand, within SM_b20481 at 496.305 kb on - strand, within SM_b20481 at 496.476 kb on + strand, within SM_b20481 at 496.477 kb on - strand, within SM_b20481 at 496.501 kb on - strand, within SM_b20481 at 496.501 kb on - strand, within SM_b20481 at 496.584 kb on + strand at 496.584 kb on + strand at 496.585 kb on - strand at 496.585 kb on - strand at 496.690 kb on + strand at 496.692 kb on + strand at 496.692 kb on + strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.693 kb on - strand at 496.785 kb on + strand at 496.957 kb on + strand, within SM_b20482 at 496.958 kb on - strand, within SM_b20482 at 496.962 kb on - strand, within SM_b20482 at 497.027 kb on - strand, within SM_b20482 at 497.048 kb on - strand, within SM_b20482 at 497.048 kb on - strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.131 kb on + strand, within SM_b20482 at 497.132 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.402 kb on - strand, within SM_b20482 at 497.430 kb on + strand, within SM_b20482 at 497.430 kb on + strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.431 kb on - strand, within SM_b20482 at 497.542 kb on + strand, within SM_b20482 at 497.543 kb on - strand, within SM_b20482
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 493,959 + +1.0 493,959 + -0.0 493,960 - +0.1 493,962 - -0.0 494,084 + +0.0 494,085 - -1.2 494,128 - SM_b20480 0.15 -1.7 494,215 + SM_b20480 0.26 -0.7 494,215 + SM_b20480 0.26 -0.4 494,368 + SM_b20480 0.45 -0.3 494,369 - SM_b20480 0.45 -0.1 494,369 - SM_b20480 0.45 -0.2 494,369 - SM_b20480 0.45 +1.0 494,370 + SM_b20480 0.46 -0.9 494,370 + SM_b20480 0.46 +0.1 494,370 + SM_b20480 0.46 +4.6 494,370 + SM_b20480 0.46 +0.4 494,370 + SM_b20480 0.46 +2.0 494,370 + SM_b20480 0.46 -1.5 494,371 - SM_b20480 0.46 -0.5 494,371 - SM_b20480 0.46 -0.4 494,371 - SM_b20480 0.46 -0.4 494,371 - SM_b20480 0.46 +0.7 494,371 - SM_b20480 0.46 +0.6 494,469 + SM_b20480 0.58 +0.3 494,470 - SM_b20480 0.58 +0.0 494,632 - SM_b20480 0.79 -0.2 494,744 + -0.3 494,744 + -0.7 494,745 - +0.4 494,764 - +0.1 495,153 + SM_b20481 0.13 -0.4 495,361 - SM_b20481 0.25 +0.5 495,362 + SM_b20481 0.25 -0.4 495,374 - SM_b20481 0.26 +0.0 495,465 + SM_b20481 0.31 -0.5 495,465 + SM_b20481 0.31 -0.9 495,466 - SM_b20481 0.31 -0.2 495,886 + SM_b20481 0.54 -1.5 495,961 - SM_b20481 0.59 -0.1 495,979 - SM_b20481 0.60 +0.4 495,979 - SM_b20481 0.60 -1.1 495,979 - SM_b20481 0.60 +1.0 496,018 + SM_b20481 0.62 -0.9 496,019 - SM_b20481 0.62 -0.8 496,229 + SM_b20481 0.74 +0.1 496,230 - SM_b20481 0.74 -0.5 496,268 + SM_b20481 0.76 -0.5 496,268 + SM_b20481 0.76 -0.1 496,269 - SM_b20481 0.76 +0.1 496,269 - SM_b20481 0.76 -0.3 496,304 + SM_b20481 0.78 -0.8 496,304 + SM_b20481 0.78 +0.1 496,305 - SM_b20481 0.78 +0.4 496,476 + SM_b20481 0.88 -0.7 496,477 - SM_b20481 0.88 +0.5 496,501 - SM_b20481 0.89 -0.6 496,501 - SM_b20481 0.89 -0.3 496,584 + -0.7 496,584 + -0.0 496,585 - -0.1 496,585 - +2.0 496,690 + -0.0 496,692 + +1.5 496,692 + +3.6 496,693 - +0.4 496,693 - +0.8 496,693 - +0.7 496,693 - +0.0 496,785 + +0.2 496,957 + SM_b20482 0.15 -0.2 496,958 - SM_b20482 0.15 +0.2 496,962 - SM_b20482 0.15 +0.1 497,027 - SM_b20482 0.19 -0.4 497,048 - SM_b20482 0.20 +0.2 497,048 - SM_b20482 0.20 -0.1 497,131 + SM_b20482 0.24 -0.5 497,131 + SM_b20482 0.24 -1.6 497,131 + SM_b20482 0.24 +0.0 497,132 - SM_b20482 0.24 -0.9 497,402 - SM_b20482 0.39 +0.2 497,402 - SM_b20482 0.39 -0.3 497,402 - SM_b20482 0.39 -1.1 497,430 + SM_b20482 0.41 +0.0 497,430 + SM_b20482 0.41 +1.3 497,431 - SM_b20482 0.41 -0.2 497,431 - SM_b20482 0.41 +0.1 497,431 - SM_b20482 0.41 +0.2 497,431 - SM_b20482 0.41 +0.3 497,542 + SM_b20482 0.47 -0.1 497,543 - SM_b20482 0.47 -1.4
Or see this region's nucleotide sequence