Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20476 and SM_b20477 are separated by 77 nucleotides SM_b20477 and SM_b20478 overlap by 4 nucleotides
SM_b20476: SM_b20476 - peptide ABC transporter substrate-binding protein, at 488,823 to 490,388
_b20476
SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413
_b20477
SM_b20478: SM_b20478 - dipeptide ABC transporter permease and ATP-binding protein, at 491,410 to 493,212
_b20478
Position (kb) 490
491
492 Strain fitness (log2 ratio) -2
-1
0
1 at 489.720 kb on + strand, within SM_b20476 at 489.832 kb on - strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 490.006 kb on - strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.387 kb on - strand at 490.462 kb on - strand at 490.475 kb on + strand at 490.476 kb on - strand at 490.476 kb on - strand at 490.589 kb on + strand, within SM_b20477 at 490.590 kb on - strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 491.058 kb on + strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.154 kb on - strand, within SM_b20477 at 491.317 kb on - strand, within SM_b20477 at 491.348 kb on + strand at 491.348 kb on + strand at 491.348 kb on + strand at 491.349 kb on - strand at 491.654 kb on + strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.655 kb on - strand, within SM_b20478 at 491.821 kb on + strand, within SM_b20478 at 491.882 kb on - strand, within SM_b20478 at 491.902 kb on - strand, within SM_b20478 at 492.003 kb on + strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478 at 492.004 kb on - strand, within SM_b20478
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 489,720 + SM_b20476 0.57 -0.4 489,832 - SM_b20476 0.64 -0.6 489,903 + SM_b20476 0.69 +0.2 489,903 + SM_b20476 0.69 -0.2 489,904 - SM_b20476 0.69 +0.0 489,904 - SM_b20476 0.69 +1.3 489,904 - SM_b20476 0.69 -0.7 489,904 - SM_b20476 0.69 +0.2 490,006 - SM_b20476 0.76 +0.2 490,164 + SM_b20476 0.86 +0.0 490,164 + SM_b20476 0.86 +0.2 490,387 - +0.0 490,462 - +0.3 490,475 + +0.3 490,476 - -0.8 490,476 - -1.2 490,589 + SM_b20477 0.13 +1.1 490,590 - SM_b20477 0.13 -0.9 490,922 + SM_b20477 0.48 +0.0 490,922 + SM_b20477 0.48 +0.7 490,923 - SM_b20477 0.48 +0.6 490,923 - SM_b20477 0.48 -1.6 490,923 - SM_b20477 0.48 +0.2 490,967 + SM_b20477 0.53 -0.4 490,967 + SM_b20477 0.53 +1.0 490,967 + SM_b20477 0.53 -0.4 490,968 - SM_b20477 0.53 -0.1 490,968 - SM_b20477 0.53 -2.3 491,058 + SM_b20477 0.62 -0.2 491,059 - SM_b20477 0.63 +0.7 491,059 - SM_b20477 0.63 -0.1 491,105 + SM_b20477 0.67 +1.5 491,105 + SM_b20477 0.67 +0.3 491,105 + SM_b20477 0.67 +0.2 491,105 + SM_b20477 0.67 +0.4 491,105 + SM_b20477 0.67 -0.3 491,105 + SM_b20477 0.67 -0.0 491,105 + SM_b20477 0.67 +0.5 491,106 - SM_b20477 0.68 -0.1 491,106 - SM_b20477 0.68 +0.1 491,154 - SM_b20477 0.73 -0.6 491,317 - SM_b20477 0.90 +1.3 491,348 + -0.7 491,348 + +0.6 491,348 + -0.5 491,349 - +0.3 491,654 + SM_b20478 0.14 -0.2 491,655 - SM_b20478 0.14 -0.6 491,655 - SM_b20478 0.14 -0.8 491,821 + SM_b20478 0.23 -0.1 491,882 - SM_b20478 0.26 -0.3 491,902 - SM_b20478 0.27 -0.1 492,003 + SM_b20478 0.33 -1.5 492,004 - SM_b20478 0.33 -0.2 492,004 - SM_b20478 0.33 +0.3
Or see this region's nucleotide sequence