Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20444 and SM_b20445 overlap by 1 nucleotides SM_b20445 and SM_b20446 are separated by 9 nucleotides
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
SM_b20445: SM_b20445 - alcohol dehydrogenase, at 456,313 to 457,371
_b20445
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1 at 455.376 kb on - strand, within SM_b20444 at 455.481 kb on - strand, within SM_b20444 at 455.579 kb on + strand, within SM_b20444 at 455.580 kb on - strand, within SM_b20444 at 455.732 kb on - strand, within SM_b20444 at 456.238 kb on + strand at 456.239 kb on - strand at 456.239 kb on - strand at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.461 kb on - strand, within SM_b20445 at 456.463 kb on + strand, within SM_b20445 at 456.509 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.702 kb on + strand, within SM_b20445 at 456.848 kb on + strand, within SM_b20445 at 456.849 kb on - strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.021 kb on + strand, within SM_b20445 at 457.082 kb on + strand, within SM_b20445 at 457.149 kb on + strand, within SM_b20445 at 457.150 kb on - strand, within SM_b20445 at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.389 kb on + strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.390 kb on - strand at 457.685 kb on - strand, within SM_b20446 at 457.829 kb on - strand, within SM_b20446 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 455,376 - SM_b20444 0.33 -1.1 455,481 - SM_b20444 0.41 -1.9 455,579 + SM_b20444 0.48 -0.4 455,580 - SM_b20444 0.48 -2.4 455,732 - SM_b20444 0.59 -0.1 456,238 + +0.5 456,239 - -0.0 456,239 - +0.0 456,461 - SM_b20445 0.14 -1.4 456,461 - SM_b20445 0.14 -0.5 456,461 - SM_b20445 0.14 -0.2 456,463 + SM_b20445 0.14 +0.0 456,509 + SM_b20445 0.19 -2.1 456,702 + SM_b20445 0.37 +0.5 456,702 + SM_b20445 0.37 -2.1 456,702 + SM_b20445 0.37 -1.0 456,702 + SM_b20445 0.37 -1.4 456,702 + SM_b20445 0.37 -0.7 456,848 + SM_b20445 0.51 -0.4 456,849 - SM_b20445 0.51 +0.2 457,021 + SM_b20445 0.67 -1.9 457,021 + SM_b20445 0.67 +1.0 457,082 + SM_b20445 0.73 +0.7 457,149 + SM_b20445 0.79 +0.3 457,150 - SM_b20445 0.79 +0.4 457,389 + +0.7 457,389 + +0.4 457,389 + -0.3 457,389 + +0.4 457,390 - +0.9 457,390 - +0.3 457,390 - -0.5 457,390 - +0.0 457,685 - SM_b20446 0.25 +0.1 457,829 - SM_b20446 0.37 +0.1 457,909 - SM_b20446 0.44 -0.1 457,978 + SM_b20446 0.49 -0.1 457,978 + SM_b20446 0.49 +0.5 457,978 + SM_b20446 0.49 +0.4 457,978 + SM_b20446 0.49 -1.3 457,978 + SM_b20446 0.49 -0.3 457,978 + SM_b20446 0.49 -0.2 457,979 - SM_b20446 0.49 -0.3 457,979 - SM_b20446 0.49 +0.1 458,140 + SM_b20446 0.63 -1.1 458,140 + SM_b20446 0.63 +0.7 458,300 + SM_b20446 0.76 -0.8 458,300 + SM_b20446 0.76 -0.6 458,301 - SM_b20446 0.76 -1.1 458,301 - SM_b20446 0.76 -0.1
Or see this region's nucleotide sequence