Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20399 and SM_b20400 are separated by 9 nucleotides SM_b20400 and SM_b20401 are separated by 26 nucleotides SM_b20401 and SM_b20402 are separated by 143 nucleotides SM_b20402 and SM_b20403 are separated by 2 nucleotides SM_b20403 and SM_b20404 overlap by 1 nucleotides
SM_b20399: SM_b20399 - hypothetical protein, at 413,764 to 414,354
_b20399
SM_b20400: SM_b20400 - hypothetical protein, at 414,364 to 414,627
_b20400
SM_b20401: SM_b20401 - hypothetical protein, at 414,654 to 414,827
_b20401
SM_b20402: SM_b20402 - alcohol dehydrogenase cytochrome c subunit precursor, at 414,971 to 416,359
_b20402
SM_b20403: SM_b20403 - oxidoreductase subunit protein, at 416,362 to 416,859
_b20403
SM_b20404: SM_b20404 - aldehyde dehydrogenase, at 416,859 to 419,099
_b20404
Position (kb) 414
415
416
417 Strain fitness (log2 ratio) -1
0
1
2 at 414.076 kb on + strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.077 kb on - strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.232 kb on + strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.233 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.285 kb on - strand, within SM_b20399 at 414.422 kb on + strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.423 kb on - strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.539 kb on + strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.567 kb on - strand, within SM_b20400 at 414.618 kb on - strand at 414.737 kb on - strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.739 kb on + strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 414.740 kb on - strand, within SM_b20401 at 415.038 kb on + strand at 415.388 kb on + strand, within SM_b20402 at 415.556 kb on + strand, within SM_b20402 at 415.595 kb on - strand, within SM_b20402 at 415.670 kb on + strand, within SM_b20402 at 415.730 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.841 kb on + strand, within SM_b20402 at 415.842 kb on - strand, within SM_b20402 at 415.943 kb on - strand, within SM_b20402 at 415.995 kb on - strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.210 kb on + strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.211 kb on - strand, within SM_b20402 at 416.288 kb on + strand at 416.288 kb on + strand at 416.288 kb on + strand at 416.289 kb on - strand at 416.429 kb on - strand, within SM_b20403 at 416.429 kb on - strand, within SM_b20403 at 416.657 kb on - strand, within SM_b20403 at 416.773 kb on - strand, within SM_b20403
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 414,076 + SM_b20399 0.53 +1.2 414,077 - SM_b20399 0.53 -0.1 414,077 - SM_b20399 0.53 -0.1 414,232 + SM_b20399 0.79 -0.8 414,232 + SM_b20399 0.79 +0.3 414,233 - SM_b20399 0.79 -0.4 414,233 - SM_b20399 0.79 -1.7 414,233 - SM_b20399 0.79 -0.1 414,285 - SM_b20399 0.88 +0.1 414,285 - SM_b20399 0.88 +0.4 414,422 + SM_b20400 0.22 -1.1 414,423 - SM_b20400 0.22 -1.0 414,423 - SM_b20400 0.22 -0.5 414,539 + SM_b20400 0.66 +0.2 414,539 + SM_b20400 0.66 -1.5 414,567 - SM_b20400 0.77 -0.6 414,567 - SM_b20400 0.77 +0.1 414,618 - +0.1 414,737 - SM_b20401 0.48 -0.6 414,739 + SM_b20401 0.49 -1.1 414,739 + SM_b20401 0.49 +2.3 414,739 + SM_b20401 0.49 -0.5 414,739 + SM_b20401 0.49 -0.5 414,740 - SM_b20401 0.49 +0.0 414,740 - SM_b20401 0.49 -1.0 414,740 - SM_b20401 0.49 -0.3 415,038 + +0.9 415,388 + SM_b20402 0.30 +2.3 415,556 + SM_b20402 0.42 -0.6 415,595 - SM_b20402 0.45 -0.6 415,670 + SM_b20402 0.50 -0.2 415,730 + SM_b20402 0.55 +0.1 415,841 + SM_b20402 0.63 -0.8 415,841 + SM_b20402 0.63 +0.2 415,841 + SM_b20402 0.63 -0.3 415,842 - SM_b20402 0.63 -1.7 415,943 - SM_b20402 0.70 -0.2 415,995 - SM_b20402 0.74 -0.4 416,210 + SM_b20402 0.89 +0.4 416,210 + SM_b20402 0.89 -1.0 416,210 + SM_b20402 0.89 -1.0 416,210 + SM_b20402 0.89 -1.5 416,210 + SM_b20402 0.89 -0.2 416,210 + SM_b20402 0.89 +0.2 416,211 - SM_b20402 0.89 -1.0 416,211 - SM_b20402 0.89 -0.6 416,211 - SM_b20402 0.89 -1.3 416,288 + +0.4 416,288 + +1.5 416,288 + +0.6 416,289 - -0.6 416,429 - SM_b20403 0.13 +0.4 416,429 - SM_b20403 0.13 +0.3 416,657 - SM_b20403 0.59 +0.0 416,773 - SM_b20403 0.83 -1.2
Or see this region's nucleotide sequence