Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20389 and SM_b20390 are separated by 435 nucleotides SM_b20390 and SM_b20391 overlap by 19 nucleotides
SM_b20389: SM_b20389 - hypothetical protein, at 400,975 to 402,000
_b20389
SM_b20390: SM_b20390 - hypothetical protein, at 402,436 to 403,668
_b20390
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 401.643 kb on - strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.690 kb on + strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.691 kb on - strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.770 kb on + strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.771 kb on - strand, within SM_b20389 at 401.862 kb on - strand, within SM_b20389 at 402.005 kb on - strand at 402.005 kb on - strand at 402.081 kb on + strand at 402.112 kb on - strand at 402.119 kb on - strand at 402.217 kb on + strand at 402.234 kb on - strand at 402.238 kb on + strand at 402.238 kb on + strand at 402.323 kb on + strand at 402.372 kb on - strand at 402.399 kb on - strand at 402.399 kb on - strand at 402.462 kb on + strand at 402.462 kb on + strand at 402.463 kb on - strand at 402.527 kb on - strand at 402.527 kb on - strand at 402.548 kb on + strand at 402.549 kb on - strand at 402.569 kb on + strand, within SM_b20390 at 403.053 kb on - strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.212 kb on - strand, within SM_b20390 at 403.367 kb on - strand, within SM_b20390 at 403.379 kb on - strand, within SM_b20390 at 403.666 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.789 kb on - strand at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 404.022 kb on + strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.025 kb on - strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.269 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.275 kb on - strand, within SM_b20391 at 404.395 kb on + strand at 404.396 kb on - strand, within SM_b20391 at 404.396 kb on - strand, within SM_b20391
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 401,643 - SM_b20389 0.65 -0.5 401,690 + SM_b20389 0.70 -0.9 401,690 + SM_b20389 0.70 -0.5 401,690 + SM_b20389 0.70 +0.8 401,690 + SM_b20389 0.70 +0.1 401,690 + SM_b20389 0.70 -0.2 401,691 - SM_b20389 0.70 -0.5 401,691 - SM_b20389 0.70 -1.6 401,691 - SM_b20389 0.70 -0.5 401,691 - SM_b20389 0.70 +0.2 401,691 - SM_b20389 0.70 -0.1 401,770 + SM_b20389 0.77 +0.3 401,770 + SM_b20389 0.77 +0.6 401,770 + SM_b20389 0.77 -1.3 401,770 + SM_b20389 0.77 -0.1 401,770 + SM_b20389 0.77 -0.7 401,770 + SM_b20389 0.77 -0.1 401,771 - SM_b20389 0.78 +0.5 401,771 - SM_b20389 0.78 -0.1 401,862 - SM_b20389 0.86 -0.1 402,005 - +0.2 402,005 - -1.7 402,081 + +0.3 402,112 - -0.4 402,119 - -0.1 402,217 + +0.2 402,234 - +0.1 402,238 + +0.5 402,238 + +0.2 402,323 + +1.3 402,372 - +0.2 402,399 - -0.1 402,399 - +0.3 402,462 + -0.6 402,462 + -0.5 402,463 - -0.3 402,527 - -0.3 402,527 - -0.7 402,548 + +1.1 402,549 - -0.4 402,569 + SM_b20390 0.11 -0.2 403,053 - SM_b20390 0.50 +0.5 403,087 + SM_b20390 0.53 +0.1 403,087 + SM_b20390 0.53 +2.1 403,087 + SM_b20390 0.53 +1.2 403,212 - SM_b20390 0.63 -0.0 403,367 - SM_b20390 0.76 +0.1 403,379 - SM_b20390 0.76 +0.5 403,666 + +0.7 403,788 + +0.4 403,788 + -0.1 403,788 + -0.5 403,789 - -0.6 403,926 + SM_b20391 0.14 -0.5 403,926 + SM_b20391 0.14 +1.1 403,926 + SM_b20391 0.14 -0.5 404,022 + SM_b20391 0.19 +0.1 404,023 - SM_b20391 0.19 -0.4 404,023 - SM_b20391 0.19 +0.0 404,025 - SM_b20391 0.19 -0.7 404,103 + SM_b20391 0.23 -0.5 404,103 + SM_b20391 0.23 -0.3 404,103 + SM_b20391 0.23 -0.4 404,104 - SM_b20391 0.23 +1.6 404,104 - SM_b20391 0.23 +0.2 404,269 + SM_b20391 0.31 +0.1 404,274 + SM_b20391 0.31 +0.2 404,274 + SM_b20391 0.31 +0.7 404,275 - SM_b20391 0.31 -0.3 404,395 + +1.1 404,396 - SM_b20391 0.37 +0.2 404,396 - SM_b20391 0.37 -0.1
Or see this region's nucleotide sequence