Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20233

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20231 and SM_b20232 are separated by 57 nucleotidesSM_b20232 and SM_b20233 overlap by 11 nucleotidesSM_b20233 and SM_b20234 are separated by 30 nucleotides SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451 _b20231 SM_b20232: SM_b20232 - sugar ABC transporter permease, at 237,509 to 238,453 _b20232 SM_b20233: SM_b20233 - sugar ABC transporter permease, at 238,443 to 239,291 _b20233 SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518 _b20234 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.657 kb on + strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.702 kb on - strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.725 kb on + strand, within SM_b20232at 237.726 kb on - strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.813 kb on + strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.814 kb on - strand, within SM_b20232at 237.957 kb on + strand, within SM_b20232at 238.041 kb on + strand, within SM_b20232at 238.042 kb on - strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.070 kb on + strand, within SM_b20232at 238.115 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.262 kb on + strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.263 kb on - strand, within SM_b20232at 238.315 kb on + strand, within SM_b20232at 238.316 kb on - strandat 238.316 kb on - strand, within SM_b20232at 238.319 kb on + strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232at 238.320 kb on - strand, within SM_b20232at 238.452 kb on - strandat 238.611 kb on - strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.644 kb on + strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.645 kb on - strand, within SM_b20233at 238.648 kb on + strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.649 kb on - strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.674 kb on + strand, within SM_b20233at 238.675 kb on - strand, within SM_b20233at 238.692 kb on + strand, within SM_b20233at 238.942 kb on - strand, within SM_b20233at 238.944 kb on + strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 238.945 kb on - strand, within SM_b20233at 239.187 kb on + strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.188 kb on - strand, within SM_b20233at 239.305 kb on - strandat 239.466 kb on + strand, within SM_b20234at 239.467 kb on - strand, within SM_b20234at 239.467 kb on - strand, within SM_b20234at 239.492 kb on + strand, within SM_b20234at 239.492 kb on + strand, within SM_b20234at 239.493 kb on - strand, within SM_b20234at 239.636 kb on + strand, within SM_b20234at 239.636 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.688 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.760 kb on + strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.761 kb on - strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.763 kb on + strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.764 kb on - strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.766 kb on + strand, within SM_b20234at 239.767 kb on - strand, within SM_b20234at 239.768 kb on + strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.769 kb on - strand, within SM_b20234at 239.919 kb on + strand, within SM_b20234at 239.952 kb on + strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.953 kb on - strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.962 kb on + strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 239.963 kb on - strand, within SM_b20234at 240.068 kb on + strand, within SM_b20234at 240.192 kb on + strand, within SM_b20234at 240.193 kb on - strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.225 kb on + strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.226 kb on - strand, within SM_b20234at 240.227 kb on + strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.228 kb on - strand, within SM_b20234at 240.238 kb on - strand, within SM_b20234

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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237,657 + SM_b20232 0.16 -0.1
237,702 - SM_b20232 0.20 -0.2
237,702 - SM_b20232 0.20 +0.0
237,702 - SM_b20232 0.20 +1.0
237,725 + SM_b20232 0.23 +0.1
237,725 + SM_b20232 0.23 -0.6
237,726 - SM_b20232 0.23 +0.1
237,813 + SM_b20232 0.32 +0.1
237,813 + SM_b20232 0.32 +0.1
237,814 - SM_b20232 0.32 +0.1
237,814 - SM_b20232 0.32 -0.0
237,957 + SM_b20232 0.47 -0.2
238,041 + SM_b20232 0.56 +1.0
238,042 - SM_b20232 0.56 -1.3
238,070 + SM_b20232 0.59 -0.1
238,070 + SM_b20232 0.59 -0.3
238,070 + SM_b20232 0.59 -0.1
238,115 + SM_b20232 0.64 -0.4
238,262 + SM_b20232 0.80 -0.2
238,262 + SM_b20232 0.80 +0.3
238,263 - SM_b20232 0.80 +1.2
238,263 - SM_b20232 0.80 -0.2
238,263 - SM_b20232 0.80 -0.9
238,315 + SM_b20232 0.85 -0.1
238,316 - +1.7
238,316 - SM_b20232 0.85 -0.0
238,319 + SM_b20232 0.86 -0.2
238,320 - SM_b20232 0.86 -0.3
238,320 - SM_b20232 0.86 +0.1
238,452 - +0.5
238,611 - SM_b20233 0.20 +0.4
238,644 + SM_b20233 0.24 -0.5
238,644 + SM_b20233 0.24 -0.2
238,644 + SM_b20233 0.24 +2.1
238,644 + SM_b20233 0.24 -0.6
238,645 - SM_b20233 0.24 -0.5
238,645 - SM_b20233 0.24 +0.0
238,648 + SM_b20233 0.24 -0.4
238,649 - SM_b20233 0.24 +0.8
238,649 - SM_b20233 0.24 -0.0
238,649 - SM_b20233 0.24 +0.1
238,674 + SM_b20233 0.27 -0.7
238,674 + SM_b20233 0.27 +2.0
238,674 + SM_b20233 0.27 +0.3
238,675 - SM_b20233 0.27 +0.0
238,692 + SM_b20233 0.29 -0.6
238,942 - SM_b20233 0.59 +0.1
238,944 + SM_b20233 0.59 +0.4
238,945 - SM_b20233 0.59 +0.8
238,945 - SM_b20233 0.59 -1.0
238,945 - SM_b20233 0.59 -0.5
238,945 - SM_b20233 0.59 +0.5
238,945 - SM_b20233 0.59 -0.0
239,187 + SM_b20233 0.88 -0.2
239,188 - SM_b20233 0.88 +0.5
239,188 - SM_b20233 0.88 -0.4
239,305 - +1.2
239,466 + SM_b20234 0.12 +0.3
239,467 - SM_b20234 0.12 -2.0
239,467 - SM_b20234 0.12 +0.4
239,492 + SM_b20234 0.14 -0.1
239,492 + SM_b20234 0.14 -1.2
239,493 - SM_b20234 0.14 -0.5
239,636 + SM_b20234 0.26 -0.1
239,636 + SM_b20234 0.26 +0.2
239,688 + SM_b20234 0.31 +1.8
239,688 + SM_b20234 0.31 -0.6
239,760 + SM_b20234 0.37 -0.7
239,760 + SM_b20234 0.37 +0.0
239,760 + SM_b20234 0.37 +0.3
239,761 - SM_b20234 0.37 +0.1
239,761 - SM_b20234 0.37 -1.4
239,761 - SM_b20234 0.37 -1.1
239,761 - SM_b20234 0.37 -0.8
239,761 - SM_b20234 0.37 -0.2
239,763 + SM_b20234 0.37 +0.3
239,763 + SM_b20234 0.37 -0.7
239,763 + SM_b20234 0.37 +0.5
239,764 - SM_b20234 0.37 -0.3
239,764 - SM_b20234 0.37 -0.2
239,764 - SM_b20234 0.37 -0.0
239,766 + SM_b20234 0.37 -1.5
239,766 + SM_b20234 0.37 +0.1
239,766 + SM_b20234 0.37 +0.0
239,767 - SM_b20234 0.37 -1.1
239,768 + SM_b20234 0.37 -0.4
239,769 - SM_b20234 0.37 +0.7
239,769 - SM_b20234 0.37 -0.5
239,919 + SM_b20234 0.50 -0.7
239,952 + SM_b20234 0.53 -0.4
239,953 - SM_b20234 0.53 -0.3
239,953 - SM_b20234 0.53 +0.1
239,962 + SM_b20234 0.53 -1.0
239,962 + SM_b20234 0.53 -0.5
239,963 - SM_b20234 0.54 -0.1
239,963 - SM_b20234 0.54 +0.8
240,068 + SM_b20234 0.62 +0.0
240,192 + SM_b20234 0.73 +0.6
240,193 - SM_b20234 0.73 -0.4
240,225 + SM_b20234 0.75 +1.1
240,225 + SM_b20234 0.75 +0.2
240,225 + SM_b20234 0.75 +0.9
240,226 - SM_b20234 0.76 -0.4
240,226 - SM_b20234 0.76 +1.9
240,227 + SM_b20234 0.76 +0.0
240,228 - SM_b20234 0.76 +0.4
240,228 - SM_b20234 0.76 +0.2
240,228 - SM_b20234 0.76 -2.6
240,238 - SM_b20234 0.77 +0.4

Or see this region's nucleotide sequence