Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20218 and SM_b20219 overlap by 1 nucleotides SM_b20219 and SM_b22002 are separated by 91 nucleotides SM_b22002 and SM_b20221 overlap by 124 nucleotides
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
SM_b20219: SM_b20219 - response regulator protein, at 227,578 to 228,315
_b20219
SM_b22002: SM_b22002 - epoxide hydrolase, at 228,407 to 228,829
_b22002
SM_b20221: SM_b20221 - epoxide hydrolase, at 228,706 to 229,740
_b20221
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.676 kb on + strand, within SM_b20218 at 226.885 kb on - strand, within SM_b20218 at 227.089 kb on - strand, within SM_b20218 at 227.135 kb on + strand, within SM_b20218 at 227.136 kb on - strand, within SM_b20218 at 227.445 kb on + strand at 227.446 kb on - strand at 227.446 kb on - strand at 227.544 kb on - strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.551 kb on + strand at 227.552 kb on - strand at 227.643 kb on + strand at 227.643 kb on + strand at 227.644 kb on - strand at 227.644 kb on - strand at 227.645 kb on + strand at 227.645 kb on + strand at 227.646 kb on - strand at 227.839 kb on - strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.006 kb on + strand, within SM_b20219 at 228.007 kb on - strand, within SM_b20219 at 228.009 kb on - strand, within SM_b20219 at 228.174 kb on + strand at 228.249 kb on - strand at 228.249 kb on - strand at 228.373 kb on + strand at 228.373 kb on + strand at 228.374 kb on - strand at 228.501 kb on + strand, within SM_b22002 at 228.504 kb on + strand at 228.552 kb on + strand, within SM_b22002 at 228.553 kb on - strand, within SM_b22002 at 228.672 kb on + strand, within SM_b22002 at 228.710 kb on + strand at 228.759 kb on + strand at 228.759 kb on + strand at 228.960 kb on + strand, within SM_b20221 at 228.961 kb on - strand, within SM_b20221 at 229.063 kb on + strand, within SM_b20221
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 226,676 + SM_b20218 0.34 +0.1 226,885 - SM_b20218 0.49 +0.8 227,089 - SM_b20218 0.64 +0.9 227,135 + SM_b20218 0.67 -0.8 227,136 - SM_b20218 0.68 +0.6 227,445 + +0.4 227,446 - +0.4 227,446 - +0.2 227,544 - -0.2 227,551 + +0.1 227,551 + -1.1 227,551 + -0.1 227,552 - -0.8 227,643 + -0.1 227,643 + +0.2 227,644 - -0.1 227,644 - -0.1 227,645 + +0.0 227,645 + +0.5 227,646 - -1.1 227,839 - SM_b20219 0.35 -0.6 228,006 + SM_b20219 0.58 -1.2 228,006 + SM_b20219 0.58 -0.8 228,007 - SM_b20219 0.58 -0.1 228,009 - SM_b20219 0.58 -0.9 228,174 + +2.1 228,249 - -1.5 228,249 - -0.2 228,373 + +0.3 228,373 + -0.2 228,374 - +0.2 228,501 + SM_b22002 0.22 -0.0 228,504 + +2.5 228,552 + SM_b22002 0.34 -0.2 228,553 - SM_b22002 0.35 +0.5 228,672 + SM_b22002 0.63 +0.1 228,710 + +0.1 228,759 + -1.7 228,759 + +2.1 228,960 + SM_b20221 0.25 -2.5 228,961 - SM_b20221 0.25 +0.3 229,063 + SM_b20221 0.34 -0.4
Or see this region's nucleotide sequence