Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20203 and SM_b20204 are separated by 282 nucleotides SM_b20204 and SM_b20205 are separated by 41 nucleotides SM_b20205 and SM_b20206 overlap by 4 nucleotides SM_b20206 and SM_b20207 overlap by 4 nucleotides
SM_b20203: SM_b20203 - transcriptional regulator, at 212,468 to 213,409
_b20203
SM_b20204: SM_b20204 - coenzyme PQQ synthesis protein PqqA, at 213,692 to 213,787
_b20204
SM_b20205: SM_b20205 - pyrroloquinoline quinone biosynthesis protein PqqB, at 213,829 to 214,740
_b20205
SM_b20206: SM_b20206 - pyrroloquinoline quinone biosynthesis protein PqqC, at 214,737 to 215,507
_b20206
SM_b20207: SM_b20207 - pyrroloquinoline quinone synthesis protein D, at 215,504 to 215,800
_b20207
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1 at 213.205 kb on + strand, within SM_b20203 at 213.452 kb on + strand at 213.452 kb on + strand at 213.453 kb on - strand at 213.453 kb on - strand at 213.485 kb on + strand at 213.486 kb on - strand at 213.519 kb on - strand at 213.598 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 213.692 kb on - strand at 214.361 kb on + strand, within SM_b20205 at 214.361 kb on + strand, within SM_b20205 at 214.362 kb on - strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.414 kb on + strand, within SM_b20205 at 214.415 kb on - strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.417 kb on + strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.418 kb on - strand, within SM_b20205 at 214.483 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.630 kb on + strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.631 kb on - strand, within SM_b20205 at 214.714 kb on + strand at 214.715 kb on - strand at 214.800 kb on + strand at 214.888 kb on - strand, within SM_b20206 at 214.888 kb on - strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.891 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.227 kb on - strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 213,205 + SM_b20203 0.78 -0.2 213,452 + -0.3 213,452 + +0.9 213,453 - -0.1 213,453 - -0.5 213,485 + +0.9 213,486 - -0.1 213,519 - -2.4 213,598 - +0.5 213,692 - -0.1 213,692 - -0.5 213,692 - -0.7 213,692 - -0.7 214,361 + SM_b20205 0.58 +0.6 214,361 + SM_b20205 0.58 -0.4 214,362 - SM_b20205 0.58 -1.1 214,414 + SM_b20205 0.64 +0.2 214,414 + SM_b20205 0.64 -0.1 214,415 - SM_b20205 0.64 +0.5 214,417 + SM_b20205 0.64 -0.8 214,417 + SM_b20205 0.64 -0.8 214,418 - SM_b20205 0.65 -0.8 214,418 - SM_b20205 0.65 -0.9 214,483 + SM_b20205 0.72 -0.4 214,630 + SM_b20205 0.88 -1.6 214,630 + SM_b20205 0.88 -0.6 214,630 + SM_b20205 0.88 -0.3 214,631 - SM_b20205 0.88 -0.7 214,631 - SM_b20205 0.88 +0.1 214,714 + -0.2 214,715 - +0.7 214,800 + +0.1 214,888 - SM_b20206 0.20 -0.4 214,888 - SM_b20206 0.20 -0.8 214,890 + SM_b20206 0.20 +0.1 214,890 + SM_b20206 0.20 +0.0 214,890 + SM_b20206 0.20 -1.0 214,891 - SM_b20206 0.20 +1.7 215,062 - SM_b20206 0.42 +0.0 215,062 - SM_b20206 0.42 -1.4 215,083 + SM_b20206 0.45 +0.1 215,083 + SM_b20206 0.45 +0.1 215,115 + SM_b20206 0.49 -0.2 215,115 + SM_b20206 0.49 +0.0 215,116 - SM_b20206 0.49 +0.7 215,116 - SM_b20206 0.49 +0.3 215,227 - SM_b20206 0.64 +0.6 215,310 + SM_b20206 0.74 -0.2 215,310 + SM_b20206 0.74 -0.2 215,311 - SM_b20206 0.74 -0.2 215,311 - SM_b20206 0.74 +1.7 215,311 - SM_b20206 0.74 -0.5 215,418 + SM_b20206 0.88 +1.0 215,418 + SM_b20206 0.88 -0.2 215,419 - SM_b20206 0.88 +0.7 215,419 - SM_b20206 0.88 +0.5
Or see this region's nucleotide sequence