Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20179 and SM_b20180 are separated by 3 nucleotides SM_b20180 and SM_b20181 are separated by 54 nucleotides SM_b20181 and SM_b20182 overlap by 26 nucleotides SM_b20182 and SM_b20183 overlap by 4 nucleotides
SM_b20179: SM_b20179 - hypothetical protein, at 196,764 to 197,738
_b20179
SM_b20180: SM_b20180 - hypothetical protein, at 197,742 to 198,221
_b20180
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
SM_b20182: SM_b20182 - ABC transporter, at 199,222 to 200,001
_b20182
SM_b20183: SM_b20183 - ABC transporter ATP-binding protein, at 199,998 to 200,621
_b20183
Position (kb) 198
199
200 Strain fitness (log2 ratio) -1
0
1 at 197.340 kb on + strand, within SM_b20179 at 197.341 kb on - strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.562 kb on + strand, within SM_b20179 at 197.948 kb on + strand, within SM_b20180 at 197.967 kb on + strand, within SM_b20180 at 197.968 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 197.971 kb on - strand, within SM_b20180 at 198.071 kb on - strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.159 kb on + strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.160 kb on - strand, within SM_b20180 at 198.400 kb on + strand, within SM_b20181 at 198.401 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.711 kb on + strand, within SM_b20181 at 198.917 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.987 kb on + strand, within SM_b20181 at 199.245 kb on + strand at 199.272 kb on - strand at 199.409 kb on - strand, within SM_b20182 at 199.532 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.806 kb on - strand, within SM_b20182 at 199.873 kb on + strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 197,340 + SM_b20179 0.59 -0.1 197,341 - SM_b20179 0.59 -0.3 197,562 + SM_b20179 0.82 -0.7 197,562 + SM_b20179 0.82 +1.1 197,562 + SM_b20179 0.82 +0.4 197,948 + SM_b20180 0.43 -0.6 197,967 + SM_b20180 0.47 -0.6 197,968 - SM_b20180 0.47 -0.2 197,971 - SM_b20180 0.48 +0.1 197,971 - SM_b20180 0.48 -0.0 197,971 - SM_b20180 0.48 -0.3 198,071 - SM_b20180 0.69 +0.2 198,159 + SM_b20180 0.87 +0.1 198,159 + SM_b20180 0.87 +0.5 198,159 + SM_b20180 0.87 +0.3 198,160 - SM_b20180 0.87 -0.8 198,160 - SM_b20180 0.87 -0.7 198,160 - SM_b20180 0.87 +0.4 198,400 + SM_b20181 0.13 -1.0 198,401 - SM_b20181 0.13 -0.6 198,568 - SM_b20181 0.30 +0.2 198,568 - SM_b20181 0.30 -1.3 198,711 + SM_b20181 0.45 -1.4 198,917 + SM_b20181 0.66 -0.4 198,933 + SM_b20181 0.68 -0.5 198,933 + SM_b20181 0.68 -0.6 198,987 + SM_b20181 0.73 -0.8 199,245 + -0.1 199,272 - -0.9 199,409 - SM_b20182 0.24 -0.0 199,532 + SM_b20182 0.40 -0.4 199,579 + SM_b20182 0.46 +0.2 199,579 + SM_b20182 0.46 -0.9 199,580 - SM_b20182 0.46 +0.4 199,580 - SM_b20182 0.46 +0.1 199,580 - SM_b20182 0.46 -0.4 199,580 - SM_b20182 0.46 +0.1 199,806 - SM_b20182 0.75 -0.2 199,873 + SM_b20182 0.83 -0.3 199,910 - SM_b20182 0.88 +0.5 199,910 - SM_b20182 0.88 -0.4
Or see this region's nucleotide sequence