Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20173 and SM_b20174 are separated by 78 nucleotides SM_b20174 and SM_b20175 overlap by 44 nucleotides SM_b20175 and SM_b20176 overlap by 4 nucleotides SM_b20176 and SM_b20177 are separated by 173 nucleotides
SM_b20173: SM_b20173 - methanol dehydrogenase, large subunit, at 190,974 to 192,779
_b20173
SM_b20174: SM_b20174 - cytochrome c protein, at 192,858 to 193,388
_b20174
SM_b20175: SM_b20175 - hypothetical protein, at 193,345 to 194,211
_b20175
SM_b20176: SM_b20176 - hypothetical protein, at 194,208 to 194,753
_b20176
SM_b20177: SM_b20177 - hypothetical protein, at 194,927 to 195,448
_b20177
Position (kb) 193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 192.597 kb on + strand, within SM_b20173 at 192.597 kb on + strand, within SM_b20173 at 192.598 kb on - strand, within SM_b20173 at 192.598 kb on - strand, within SM_b20173 at 192.598 kb on - strand, within SM_b20173 at 192.618 kb on + strand at 192.618 kb on + strand at 192.715 kb on - strand at 192.732 kb on + strand at 192.732 kb on + strand at 192.732 kb on + strand at 192.733 kb on - strand at 192.778 kb on - strand at 192.816 kb on - strand at 192.834 kb on + strand at 192.834 kb on + strand at 192.908 kb on + strand at 192.908 kb on + strand at 192.981 kb on + strand, within SM_b20174 at 192.981 kb on + strand, within SM_b20174 at 192.984 kb on + strand, within SM_b20174 at 192.984 kb on + strand, within SM_b20174 at 192.985 kb on - strand, within SM_b20174 at 192.985 kb on - strand, within SM_b20174 at 193.065 kb on + strand, within SM_b20174 at 193.116 kb on + strand, within SM_b20174 at 193.116 kb on + strand, within SM_b20174 at 193.117 kb on - strand, within SM_b20174 at 193.155 kb on + strand, within SM_b20174 at 193.156 kb on - strand, within SM_b20174 at 193.159 kb on - strand, within SM_b20174 at 193.257 kb on + strand, within SM_b20174 at 193.258 kb on - strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.272 kb on + strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.273 kb on - strand, within SM_b20174 at 193.386 kb on + strand at 193.386 kb on + strand at 193.461 kb on - strand, within SM_b20175 at 193.588 kb on + strand, within SM_b20175 at 193.589 kb on - strand, within SM_b20175 at 193.702 kb on + strand, within SM_b20175 at 193.703 kb on - strand, within SM_b20175 at 193.705 kb on + strand, within SM_b20175 at 193.705 kb on + strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.706 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.708 kb on - strand, within SM_b20175 at 193.717 kb on + strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.718 kb on - strand, within SM_b20175 at 193.830 kb on + strand, within SM_b20175 at 193.831 kb on - strand, within SM_b20175 at 193.867 kb on + strand, within SM_b20175 at 193.868 kb on - strand, within SM_b20175 at 194.050 kb on + strand, within SM_b20175 at 194.407 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.488 kb on + strand, within SM_b20176 at 194.539 kb on - strand, within SM_b20176 at 194.652 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.658 kb on + strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.659 kb on - strand, within SM_b20176 at 194.822 kb on - strand at 194.959 kb on - strand at 194.959 kb on - strand at 195.065 kb on + strand, within SM_b20177 at 195.070 kb on + strand, within SM_b20177 at 195.071 kb on - strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177 at 195.108 kb on + strand, within SM_b20177
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 192,597 + SM_b20173 0.90 -0.2 192,597 + SM_b20173 0.90 +0.2 192,598 - SM_b20173 0.90 +1.2 192,598 - SM_b20173 0.90 -0.4 192,598 - SM_b20173 0.90 -1.2 192,618 + +0.5 192,618 + -1.8 192,715 - -0.3 192,732 + -0.0 192,732 + +0.2 192,732 + +0.6 192,733 - -1.3 192,778 - -0.1 192,816 - -0.9 192,834 + -1.5 192,834 + +0.2 192,908 + +1.2 192,908 + -0.5 192,981 + SM_b20174 0.23 +0.2 192,981 + SM_b20174 0.23 +0.8 192,984 + SM_b20174 0.24 +0.0 192,984 + SM_b20174 0.24 +0.9 192,985 - SM_b20174 0.24 +0.8 192,985 - SM_b20174 0.24 +0.3 193,065 + SM_b20174 0.39 +0.5 193,116 + SM_b20174 0.49 -0.0 193,116 + SM_b20174 0.49 -0.0 193,117 - SM_b20174 0.49 -1.1 193,155 + SM_b20174 0.56 -1.1 193,156 - SM_b20174 0.56 -1.1 193,159 - SM_b20174 0.57 +0.5 193,257 + SM_b20174 0.75 +0.2 193,258 - SM_b20174 0.75 +0.5 193,272 + SM_b20174 0.78 -0.0 193,272 + SM_b20174 0.78 -0.3 193,272 + SM_b20174 0.78 +0.0 193,272 + SM_b20174 0.78 +0.3 193,272 + SM_b20174 0.78 -0.7 193,272 + SM_b20174 0.78 +0.3 193,272 + SM_b20174 0.78 +0.8 193,272 + SM_b20174 0.78 +0.1 193,273 - SM_b20174 0.78 +0.3 193,273 - SM_b20174 0.78 -0.5 193,273 - SM_b20174 0.78 -0.1 193,273 - SM_b20174 0.78 +0.2 193,273 - SM_b20174 0.78 +0.0 193,273 - SM_b20174 0.78 +4.0 193,273 - SM_b20174 0.78 -0.2 193,386 + -0.5 193,386 + -0.4 193,461 - SM_b20175 0.13 -1.1 193,588 + SM_b20175 0.28 -0.8 193,589 - SM_b20175 0.28 +1.4 193,702 + SM_b20175 0.41 +0.2 193,703 - SM_b20175 0.41 -1.2 193,705 + SM_b20175 0.42 -0.4 193,705 + SM_b20175 0.42 -1.5 193,706 - SM_b20175 0.42 +0.8 193,706 - SM_b20175 0.42 -0.9 193,706 - SM_b20175 0.42 +0.0 193,706 - SM_b20175 0.42 +0.8 193,708 - SM_b20175 0.42 -0.2 193,708 - SM_b20175 0.42 -1.6 193,708 - SM_b20175 0.42 -0.8 193,708 - SM_b20175 0.42 -1.1 193,708 - SM_b20175 0.42 -0.3 193,708 - SM_b20175 0.42 +0.4 193,708 - SM_b20175 0.42 -0.1 193,717 + SM_b20175 0.43 -1.7 193,718 - SM_b20175 0.43 -0.7 193,718 - SM_b20175 0.43 +2.5 193,718 - SM_b20175 0.43 +0.4 193,718 - SM_b20175 0.43 -0.2 193,830 + SM_b20175 0.56 +0.2 193,831 - SM_b20175 0.56 -1.2 193,867 + SM_b20175 0.60 +0.2 193,868 - SM_b20175 0.60 +1.3 194,050 + SM_b20175 0.81 +0.3 194,407 + SM_b20176 0.36 +0.9 194,488 + SM_b20176 0.51 -0.5 194,488 + SM_b20176 0.51 -0.2 194,539 - SM_b20176 0.61 +0.5 194,652 + SM_b20176 0.81 -0.8 194,658 + SM_b20176 0.82 -0.6 194,658 + SM_b20176 0.82 +0.4 194,659 - SM_b20176 0.83 +2.1 194,659 - SM_b20176 0.83 +0.5 194,822 - -2.0 194,959 - -0.5 194,959 - +0.8 195,065 + SM_b20177 0.26 +0.1 195,070 + SM_b20177 0.27 +0.2 195,071 - SM_b20177 0.28 +0.1 195,108 + SM_b20177 0.35 +0.1 195,108 + SM_b20177 0.35 -1.4
Or see this region's nucleotide sequence