Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20161 and SM_b20162 are separated by 193 nucleotides SM_b20162 and SM_b20163 are separated by 44 nucleotides SM_b20163 and SM_b20164 overlap by 4 nucleotides
SM_b20161: SM_b20161 - hypothetical protein, at 179,533 to 179,883
_b20161
SM_b20162: SM_b20162 - transcriptional regulator, at 180,077 to 180,766
_b20162
SM_b20163: SM_b20163 - hypothetical protein, at 180,811 to 181,980
_b20163
SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220
_b20164
Position (kb) 180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 179.910 kb on + strand at 179.910 kb on + strand at 179.911 kb on - strand at 180.059 kb on + strand at 180.060 kb on - strand at 180.149 kb on + strand, within SM_b20162 at 180.150 kb on - strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.190 kb on + strand, within SM_b20162 at 180.304 kb on - strand, within SM_b20162 at 180.442 kb on + strand, within SM_b20162 at 180.443 kb on - strand, within SM_b20162 at 180.466 kb on + strand, within SM_b20162 at 180.485 kb on + strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.486 kb on - strand, within SM_b20162 at 180.501 kb on - strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.673 kb on + strand, within SM_b20162 at 180.674 kb on - strand, within SM_b20162 at 180.741 kb on + strand at 180.742 kb on - strand at 181.261 kb on - strand, within SM_b20163 at 181.261 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.535 kb on - strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.621 kb on + strand, within SM_b20163 at 181.622 kb on - strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.804 kb on + strand, within SM_b20163 at 181.805 kb on - strand, within SM_b20163 at 181.895 kb on - strand at 182.163 kb on - strand at 182.163 kb on - strand at 182.219 kb on - strand, within SM_b20164 at 182.368 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164 at 182.777 kb on - strand, within SM_b20164
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 179,910 + +0.0 179,910 + +0.3 179,911 - +0.5 180,059 + +0.5 180,060 - +0.5 180,149 + SM_b20162 0.10 +1.0 180,150 - SM_b20162 0.11 +0.9 180,190 + SM_b20162 0.16 +0.2 180,190 + SM_b20162 0.16 -0.1 180,304 - SM_b20162 0.33 +0.1 180,442 + SM_b20162 0.53 +0.4 180,443 - SM_b20162 0.53 -0.3 180,466 + SM_b20162 0.56 +0.6 180,485 + SM_b20162 0.59 -0.3 180,486 - SM_b20162 0.59 -0.3 180,486 - SM_b20162 0.59 +0.3 180,486 - SM_b20162 0.59 +0.3 180,486 - SM_b20162 0.59 -0.8 180,486 - SM_b20162 0.59 +2.2 180,501 - SM_b20162 0.61 +1.1 180,673 + SM_b20162 0.86 +0.5 180,673 + SM_b20162 0.86 +0.0 180,673 + SM_b20162 0.86 -1.1 180,674 - SM_b20162 0.87 -0.3 180,741 + -0.0 180,742 - -0.3 181,261 - SM_b20163 0.38 -0.4 181,261 - SM_b20163 0.38 +0.2 181,535 - SM_b20163 0.62 +1.8 181,535 - SM_b20163 0.62 +0.9 181,535 - SM_b20163 0.62 -2.2 181,621 + SM_b20163 0.69 -0.7 181,621 + SM_b20163 0.69 +0.3 181,622 - SM_b20163 0.69 +1.2 181,804 + SM_b20163 0.85 +0.5 181,804 + SM_b20163 0.85 +0.4 181,805 - SM_b20163 0.85 -0.3 181,895 - +1.1 182,163 - +0.3 182,163 - +0.3 182,219 - SM_b20164 0.11 +0.1 182,368 - SM_b20164 0.17 +0.1 182,777 - SM_b20164 0.36 +0.2 182,777 - SM_b20164 0.36 -0.3 182,777 - SM_b20164 0.36 +0.7
Or see this region's nucleotide sequence