Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20145 and SM_b20146 overlap by 1 nucleotides SM_b20146 and SM_b20147 overlap by 4 nucleotides SM_b20147 and SM_b20148 are separated by 224 nucleotides SM_b20148 and SM_b20149 are separated by 3 nucleotides
SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393
_b20145
SM_b20146: SM_b20146 - pyridoxal phosphate biosynthetic protein, at 161,393 to 162,358
_b20146
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
SM_b20148: SM_b20148 - transcriptional regulator, at 163,686 to 164,387
_b20148
SM_b20149: SM_b20149 - hypothetical protein, at 164,391 to 165,422
_b20149
Position (kb) 162
163
164 Strain fitness (log2 ratio) -1
0
1
2
3 at 161.500 kb on + strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.585 kb on - strand, within SM_b20146 at 161.735 kb on - strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.802 kb on - strand, within SM_b20146 at 161.803 kb on + strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 162.110 kb on + strand at 162.110 kb on + strand, within SM_b20146 at 162.144 kb on - strand, within SM_b20146 at 162.201 kb on + strand, within SM_b20146 at 162.202 kb on - strand, within SM_b20146 at 162.271 kb on + strand at 162.308 kb on + strand at 162.309 kb on - strand at 162.360 kb on + strand at 162.630 kb on - strand, within SM_b20147 at 162.630 kb on - strand, within SM_b20147 at 162.648 kb on - strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.862 kb on + strand, within SM_b20147 at 162.949 kb on - strand, within SM_b20147 at 162.949 kb on - strand, within SM_b20147 at 162.998 kb on - strand, within SM_b20147 at 163.063 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.313 kb on + strand, within SM_b20147 at 163.314 kb on - strand, within SM_b20147 at 163.459 kb on + strand at 163.627 kb on + strand at 163.628 kb on - strand at 163.687 kb on + strand at 163.906 kb on + strand, within SM_b20148 at 163.907 kb on - strand, within SM_b20148 at 164.092 kb on + strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.093 kb on - strand, within SM_b20148 at 164.191 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.220 kb on + strand, within SM_b20148 at 164.248 kb on - strand, within SM_b20148 at 164.393 kb on - strand at 164.409 kb on + strand at 164.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 161,500 + SM_b20146 0.11 -0.1 161,505 - SM_b20146 0.12 +2.1 161,505 - SM_b20146 0.12 +2.2 161,570 + SM_b20146 0.18 +0.8 161,570 + SM_b20146 0.18 -0.8 161,585 - SM_b20146 0.20 +1.8 161,735 - SM_b20146 0.35 +2.6 161,801 + SM_b20146 0.42 +0.9 161,801 + SM_b20146 0.42 +0.3 161,802 - SM_b20146 0.42 +2.3 161,803 + SM_b20146 0.42 -0.4 161,804 - SM_b20146 0.43 +2.6 161,804 - SM_b20146 0.43 +2.3 162,110 + -0.2 162,110 + SM_b20146 0.74 +0.3 162,144 - SM_b20146 0.78 +2.4 162,201 + SM_b20146 0.84 -0.9 162,202 - SM_b20146 0.84 +2.8 162,271 + -0.5 162,308 + +0.2 162,309 - +1.7 162,360 + +0.2 162,630 - SM_b20147 0.25 -0.0 162,630 - SM_b20147 0.25 +0.2 162,648 - SM_b20147 0.26 -0.9 162,862 + SM_b20147 0.46 -1.0 162,862 + SM_b20147 0.46 +0.1 162,862 + SM_b20147 0.46 +0.2 162,949 - SM_b20147 0.54 +0.6 162,949 - SM_b20147 0.54 -0.0 162,998 - SM_b20147 0.58 +1.0 163,063 + SM_b20147 0.64 +1.6 163,313 + SM_b20147 0.87 -0.7 163,313 + SM_b20147 0.87 -0.6 163,313 + SM_b20147 0.87 -0.2 163,313 + SM_b20147 0.87 +0.2 163,314 - SM_b20147 0.87 +0.5 163,459 + -0.1 163,627 + -0.2 163,628 - -1.0 163,687 + -0.3 163,906 + SM_b20148 0.31 +0.9 163,907 - SM_b20148 0.31 -0.6 164,092 + SM_b20148 0.58 -0.8 164,093 - SM_b20148 0.58 +0.5 164,093 - SM_b20148 0.58 -0.2 164,191 + SM_b20148 0.72 -0.6 164,220 + SM_b20148 0.76 +0.5 164,220 + SM_b20148 0.76 -0.6 164,220 + SM_b20148 0.76 -0.0 164,248 - SM_b20148 0.80 -0.5 164,393 - -0.5 164,409 + +0.8 164,410 - +0.0
Or see this region's nucleotide sequence