Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18910

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18900 and RS_RS18905 overlap by 13 nucleotidesRS_RS18905 and RS_RS18910 overlap by 4 nucleotidesRS_RS18910 and RS_RS18915 are separated by 10 nucleotides RS_RS18900: RS_RS18900 - outer membrane lipoprotein carrier protein LolA, at 469,665 to 470,297 _RS18900 RS_RS18905: RS_RS18905 - acyl-CoA thioesterase, at 470,285 to 470,719 _RS18905 RS_RS18910: RS_RS18910 - histidine ammonia-lyase, at 470,716 to 472,284 _RS18910 RS_RS18915: RS_RS18915 - acyltransferase, at 472,295 to 474,004 _RS18915 Position (kb) 470 471 472 473Strain fitness (log2 ratio) -2 -1 0 1at 469.783 kb on + strand, within RS_RS18900at 469.783 kb on + strand, within RS_RS18900at 469.783 kb on + strand, within RS_RS18900at 469.784 kb on - strand, within RS_RS18900at 469.784 kb on - strand, within RS_RS18900at 469.784 kb on - strand, within RS_RS18900at 469.900 kb on + strand, within RS_RS18900at 469.901 kb on - strand, within RS_RS18900at 469.901 kb on - strand, within RS_RS18900at 469.901 kb on - strand, within RS_RS18900at 470.038 kb on + strand, within RS_RS18900at 470.038 kb on + strand, within RS_RS18900at 470.213 kb on + strand, within RS_RS18900at 470.491 kb on - strand, within RS_RS18905at 470.509 kb on - strand, within RS_RS18905at 470.613 kb on + strand, within RS_RS18905at 470.614 kb on - strand, within RS_RS18905at 470.622 kb on + strand, within RS_RS18905at 470.622 kb on + strand, within RS_RS18905at 471.327 kb on + strand, within RS_RS18910at 471.426 kb on - strand, within RS_RS18910at 471.626 kb on + strand, within RS_RS18910at 471.627 kb on - strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.727 kb on + strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.728 kb on - strand, within RS_RS18910at 471.798 kb on - strand, within RS_RS18910at 471.798 kb on - strand, within RS_RS18910at 471.900 kb on + strand, within RS_RS18910at 471.900 kb on + strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.901 kb on - strand, within RS_RS18910at 471.903 kb on - strand, within RS_RS18910at 471.903 kb on - strand, within RS_RS18910at 472.091 kb on + strand, within RS_RS18910at 472.092 kb on - strand, within RS_RS18910at 472.092 kb on - strand, within RS_RS18910at 472.470 kb on + strand, within RS_RS18915at 472.470 kb on + strand, within RS_RS18915at 472.479 kb on + strand, within RS_RS18915at 472.480 kb on - strand, within RS_RS18915at 472.545 kb on + strand, within RS_RS18915at 472.545 kb on + strand, within RS_RS18915at 472.546 kb on - strand, within RS_RS18915at 472.779 kb on + strand, within RS_RS18915at 473.067 kb on + strand, within RS_RS18915at 473.068 kb on - strand, within RS_RS18915at 473.068 kb on - strand, within RS_RS18915at 473.113 kb on - strand, within RS_RS18915

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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469,783 + RS_RS18900 0.19 -0.0
469,783 + RS_RS18900 0.19 +0.2
469,783 + RS_RS18900 0.19 -0.7
469,784 - RS_RS18900 0.19 +0.4
469,784 - RS_RS18900 0.19 -0.4
469,784 - RS_RS18900 0.19 -0.1
469,900 + RS_RS18900 0.37 -0.0
469,901 - RS_RS18900 0.37 -0.3
469,901 - RS_RS18900 0.37 -0.1
469,901 - RS_RS18900 0.37 -0.1
470,038 + RS_RS18900 0.59 +0.2
470,038 + RS_RS18900 0.59 +0.3
470,213 + RS_RS18900 0.87 -0.6
470,491 - RS_RS18905 0.47 +0.2
470,509 - RS_RS18905 0.51 -0.1
470,613 + RS_RS18905 0.75 +0.2
470,614 - RS_RS18905 0.76 -1.7
470,622 + RS_RS18905 0.77 +0.3
470,622 + RS_RS18905 0.77 +0.3
471,327 + RS_RS18910 0.39 +0.3
471,426 - RS_RS18910 0.45 +0.3
471,626 + RS_RS18910 0.58 +0.3
471,627 - RS_RS18910 0.58 +0.0
471,727 + RS_RS18910 0.64 +0.1
471,727 + RS_RS18910 0.64 +0.4
471,727 + RS_RS18910 0.64 +0.6
471,728 - RS_RS18910 0.64 -0.1
471,728 - RS_RS18910 0.64 +0.1
471,728 - RS_RS18910 0.64 -0.3
471,728 - RS_RS18910 0.64 -0.3
471,798 - RS_RS18910 0.69 -0.0
471,798 - RS_RS18910 0.69 +1.0
471,900 + RS_RS18910 0.75 +0.0
471,900 + RS_RS18910 0.75 +0.3
471,901 - RS_RS18910 0.76 +0.2
471,901 - RS_RS18910 0.76 -0.3
471,901 - RS_RS18910 0.76 +0.1
471,901 - RS_RS18910 0.76 +0.9
471,901 - RS_RS18910 0.76 +0.8
471,903 - RS_RS18910 0.76 +0.5
471,903 - RS_RS18910 0.76 -0.5
472,091 + RS_RS18910 0.88 +0.1
472,092 - RS_RS18910 0.88 -0.7
472,092 - RS_RS18910 0.88 +0.7
472,470 + RS_RS18915 0.10 -0.1
472,470 + RS_RS18915 0.10 -0.5
472,479 + RS_RS18915 0.11 +0.3
472,480 - RS_RS18915 0.11 -1.1
472,545 + RS_RS18915 0.15 -0.8
472,545 + RS_RS18915 0.15 -0.4
472,546 - RS_RS18915 0.15 +1.0
472,779 + RS_RS18915 0.28 +0.3
473,067 + RS_RS18915 0.45 +0.1
473,068 - RS_RS18915 0.45 -1.9
473,068 - RS_RS18915 0.45 +0.5
473,113 - RS_RS18915 0.48 -0.3

Or see this region's nucleotide sequence