Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17675

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17665 and RS_RS17670 are separated by 167 nucleotidesRS_RS17670 and RS_RS17675 are separated by 104 nucleotidesRS_RS17675 and RS_RS17680 are separated by 19 nucleotides RS_RS17665: RS_RS17665 - MFS transporter, at 122,168 to 123,466 _RS17665 RS_RS17670: RS_RS17670 - TetR/AcrR family transcriptional regulator, at 123,634 to 124,284 _RS17670 RS_RS17675: RS_RS17675 - MoxR family ATPase, at 124,389 to 125,354 _RS17675 RS_RS17680: RS_RS17680 - DUF58 domain-containing protein, at 125,374 to 126,420 _RS17680 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.578 kb on - strandat 123.751 kb on + strand, within RS_RS17670at 123.823 kb on + strand, within RS_RS17670at 123.862 kb on + strand, within RS_RS17670at 123.862 kb on + strand, within RS_RS17670at 123.863 kb on - strand, within RS_RS17670at 123.863 kb on - strand, within RS_RS17670at 124.174 kb on + strand, within RS_RS17670at 124.174 kb on + strand, within RS_RS17670at 124.175 kb on - strand, within RS_RS17670at 124.175 kb on - strand, within RS_RS17670at 124.175 kb on - strand, within RS_RS17670at 124.312 kb on + strandat 124.312 kb on + strandat 124.312 kb on + strandat 124.633 kb on - strand, within RS_RS17675at 124.692 kb on + strand, within RS_RS17675at 124.692 kb on + strand, within RS_RS17675at 124.692 kb on + strand, within RS_RS17675at 124.766 kb on + strand, within RS_RS17675at 124.846 kb on - strand, within RS_RS17675at 125.103 kb on + strand, within RS_RS17675at 125.103 kb on + strand, within RS_RS17675at 125.103 kb on + strand, within RS_RS17675at 125.104 kb on - strand, within RS_RS17675at 125.104 kb on - strand, within RS_RS17675at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.503 kb on + strand, within RS_RS17680at 125.504 kb on - strand, within RS_RS17680at 125.575 kb on + strand, within RS_RS17680at 125.575 kb on + strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.576 kb on - strand, within RS_RS17680at 125.929 kb on + strand, within RS_RS17680at 125.930 kb on - strand, within RS_RS17680at 126.295 kb on + strand, within RS_RS17680

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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123,578 - +0.0
123,751 + RS_RS17670 0.18 -0.1
123,823 + RS_RS17670 0.29 +1.3
123,862 + RS_RS17670 0.35 -0.3
123,862 + RS_RS17670 0.35 -0.6
123,863 - RS_RS17670 0.35 +0.0
123,863 - RS_RS17670 0.35 -0.3
124,174 + RS_RS17670 0.83 +0.3
124,174 + RS_RS17670 0.83 -0.7
124,175 - RS_RS17670 0.83 -1.5
124,175 - RS_RS17670 0.83 +0.4
124,175 - RS_RS17670 0.83 -1.1
124,312 + +0.1
124,312 + +0.3
124,312 + +0.1
124,633 - RS_RS17675 0.25 -1.3
124,692 + RS_RS17675 0.31 +0.2
124,692 + RS_RS17675 0.31 +0.2
124,692 + RS_RS17675 0.31 +0.1
124,766 + RS_RS17675 0.39 -0.7
124,846 - RS_RS17675 0.47 -1.3
125,103 + RS_RS17675 0.74 -0.5
125,103 + RS_RS17675 0.74 -0.0
125,103 + RS_RS17675 0.74 -1.0
125,104 - RS_RS17675 0.74 +0.1
125,104 - RS_RS17675 0.74 -0.9
125,503 + RS_RS17680 0.12 +0.5
125,503 + RS_RS17680 0.12 +0.5
125,503 + RS_RS17680 0.12 +0.4
125,503 + RS_RS17680 0.12 +0.1
125,503 + RS_RS17680 0.12 +0.7
125,503 + RS_RS17680 0.12 +1.4
125,503 + RS_RS17680 0.12 -0.8
125,504 - RS_RS17680 0.12 -0.3
125,575 + RS_RS17680 0.19 +0.7
125,575 + RS_RS17680 0.19 +0.1
125,576 - RS_RS17680 0.19 +0.1
125,576 - RS_RS17680 0.19 -1.0
125,576 - RS_RS17680 0.19 +1.4
125,576 - RS_RS17680 0.19 +0.8
125,576 - RS_RS17680 0.19 -0.8
125,576 - RS_RS17680 0.19 +0.6
125,576 - RS_RS17680 0.19 +0.0
125,576 - RS_RS17680 0.19 -1.1
125,929 + RS_RS17680 0.53 -2.1
125,930 - RS_RS17680 0.53 -0.2
126,295 + RS_RS17680 0.88 +0.4

Or see this region's nucleotide sequence